miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 105362 0.66 0.996605
Target:  5'- --gCGUCcGCGUCGACGGGggGCGg- -3'
miRNA:   3'- ccaGUAGaUGCGGCUGUUCuaCGCgu -5'
14280 3' -51.8 NC_003521.1 + 108032 0.71 0.95042
Target:  5'- cGG-CGUCagGCGgCGGCGGGAUGaCGCGa -3'
miRNA:   3'- -CCaGUAGa-UGCgGCUGUUCUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 109392 0.68 0.989477
Target:  5'- aGGUCG-CggaagGCGCU--CAGGGUGCGCGg -3'
miRNA:   3'- -CCAGUaGa----UGCGGcuGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 109566 0.66 0.996605
Target:  5'- uGGUCGUCggcuagcAUGCgCGugAAG-UGCGCc -3'
miRNA:   3'- -CCAGUAGa------UGCG-GCugUUCuACGCGu -5'
14280 3' -51.8 NC_003521.1 + 111700 0.66 0.997107
Target:  5'- aGUCGg--ACGCCGACGuccAGuccGUGCGCc -3'
miRNA:   3'- cCAGUagaUGCGGCUGU---UC---UACGCGu -5'
14280 3' -51.8 NC_003521.1 + 112134 0.68 0.988081
Target:  5'- cGG-UAUCUGCG-CGAgGAGcUGCGCGa -3'
miRNA:   3'- -CCaGUAGAUGCgGCUgUUCuACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 113383 0.68 0.988081
Target:  5'- gGGUUAcggCggACGCCG-CGggcGGGUGCGCAa -3'
miRNA:   3'- -CCAGUa--Ga-UGCGGCuGU---UCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 113686 0.66 0.997107
Target:  5'- cGGcgAUCUGCGCCGcCuGGAgGUGCAc -3'
miRNA:   3'- -CCagUAGAUGCGGCuGuUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 116609 0.66 0.997927
Target:  5'- aGUCG-CUGCGgcCCGACAAGGUG-GUg -3'
miRNA:   3'- cCAGUaGAUGC--GGCUGUUCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 116797 0.7 0.954437
Target:  5'- uGGcCGUCUACGgccgcgaccCCGACuGGGUGCuGCAg -3'
miRNA:   3'- -CCaGUAGAUGC---------GGCUGuUCUACG-CGU- -5'
14280 3' -51.8 NC_003521.1 + 117638 0.69 0.976494
Target:  5'- uGUCGUuccgccugcgaCUGCGCCG-CGAGAcggUGCGCc -3'
miRNA:   3'- cCAGUA-----------GAUGCGGCuGUUCU---ACGCGu -5'
14280 3' -51.8 NC_003521.1 + 119467 0.76 0.739203
Target:  5'- uGGUCAUCaa-GCCgGGCAAGAcgGCGCAc -3'
miRNA:   3'- -CCAGUAGaugCGG-CUGUUCUa-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 121046 0.68 0.986545
Target:  5'- cGUCGccgCUGCGCCGGucCcAGGUGUGCu -3'
miRNA:   3'- cCAGUa--GAUGCGGCU--GuUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 122662 0.68 0.983024
Target:  5'- cGUCGUCUGCGgCGGUggGGUG-GCGu -3'
miRNA:   3'- cCAGUAGAUGCgGCUGuuCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 122738 0.68 0.983024
Target:  5'- --aCGUgaGCGCCGACAGGAgcCGCGg -3'
miRNA:   3'- ccaGUAgaUGCGGCUGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 123577 0.66 0.996034
Target:  5'- aGUCGUgCaGCGCCG-CGuGAUGCGUg -3'
miRNA:   3'- cCAGUA-GaUGCGGCuGUuCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 125007 0.72 0.926843
Target:  5'- gGGUCAUgUUGCGCa-GCAGGcUGCGCAu -3'
miRNA:   3'- -CCAGUA-GAUGCGgcUGUUCuACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 125232 0.69 0.971221
Target:  5'- uGGUacuUUUACcugaucgguaCCGGCAAGAUGCGCAu -3'
miRNA:   3'- -CCAgu-AGAUGc---------GGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 127459 0.66 0.997891
Target:  5'- uGGcCGUUguugACGCCcGCcagcgccGAGAUGCGCGu -3'
miRNA:   3'- -CCaGUAGa---UGCGGcUG-------UUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 127661 0.69 0.976494
Target:  5'- cGGccCAUCUugGCCGcgaGCAGGcgGCGgGu -3'
miRNA:   3'- -CCa-GUAGAugCGGC---UGUUCuaCGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.