miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 136800 0.73 0.883942
Target:  5'- cGGUCAcgCUGCccGCCGACGAccccggcGUGCGCAu -3'
miRNA:   3'- -CCAGUa-GAUG--CGGCUGUUc------UACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 138002 0.74 0.854489
Target:  5'- aGGUCgAUCU-CGgCGuCGAGGUGCGCGu -3'
miRNA:   3'- -CCAG-UAGAuGCgGCuGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 85449 0.74 0.846611
Target:  5'- cGUCGUCcGCGCCGGCGAGAaagGUGg- -3'
miRNA:   3'- cCAGUAGaUGCGGCUGUUCUa--CGCgu -5'
14280 3' -51.8 NC_003521.1 + 70692 0.76 0.729436
Target:  5'- cGG-CGUCUGCGCCG-CAAGcUGCGUc -3'
miRNA:   3'- -CCaGUAGAUGCGGCuGUUCuACGCGu -5'
14280 3' -51.8 NC_003521.1 + 116797 0.7 0.954437
Target:  5'- uGGcCGUCUACGgccgcgaccCCGACuGGGUGCuGCAg -3'
miRNA:   3'- -CCaGUAGAUGC---------GGCUGuUCUACG-CGU- -5'
14280 3' -51.8 NC_003521.1 + 96772 0.7 0.965149
Target:  5'- cGGUCgccGUCgcCGCCGGCAgcagcGGcgGCGCu -3'
miRNA:   3'- -CCAG---UAGauGCGGCUGU-----UCuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 70285 0.68 0.988081
Target:  5'- aGGUCG---GCGCCGAagagaAAGcgGUGCAg -3'
miRNA:   3'- -CCAGUagaUGCGGCUg----UUCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 121046 0.68 0.986545
Target:  5'- cGUCGccgCUGCGCCGGucCcAGGUGUGCu -3'
miRNA:   3'- cCAGUa--GAUGCGGCU--GuUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 103869 0.68 0.984862
Target:  5'- uGGcgAUCaGCGCCGACAgggGGAUGgGCu -3'
miRNA:   3'- -CCagUAGaUGCGGCUGU---UCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 131237 0.68 0.983024
Target:  5'- cGUCG-CgacggcgAUGCCGACGGGAgcgGCGCu -3'
miRNA:   3'- cCAGUaGa------UGCGGCUGUUCUa--CGCGu -5'
14280 3' -51.8 NC_003521.1 + 122738 0.68 0.983024
Target:  5'- --aCGUgaGCGCCGACAGGAgcCGCGg -3'
miRNA:   3'- ccaGUAgaUGCGGCUGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 151978 0.68 0.983024
Target:  5'- aGUUcUCUACGCaCGAgAGGAUGgUGCAc -3'
miRNA:   3'- cCAGuAGAUGCG-GCUgUUCUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 100219 0.69 0.981021
Target:  5'- aGGUCGU--AgGCCGGCGAGGUGgaGCu -3'
miRNA:   3'- -CCAGUAgaUgCGGCUGUUCUACg-CGu -5'
14280 3' -51.8 NC_003521.1 + 69848 0.69 0.981021
Target:  5'- aGGUCGaugacGCGCCGAUGAGGccgccGCGCAg -3'
miRNA:   3'- -CCAGUaga--UGCGGCUGUUCUa----CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 102326 0.69 0.973955
Target:  5'- cGUCGUCgugcgcguggGCGCCGACGccgGGGUG-GCGg -3'
miRNA:   3'- cCAGUAGa---------UGCGGCUGU---UCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 138589 0.69 0.971221
Target:  5'- cGG-CAUCU-CGCCGgacaccauguACGAGGUGUGCc -3'
miRNA:   3'- -CCaGUAGAuGCGGC----------UGUUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 136255 0.7 0.969486
Target:  5'- cGG-CcgCUACGCCGACGuGAUucaggaggugguggaGCGCGa -3'
miRNA:   3'- -CCaGuaGAUGCGGCUGUuCUA---------------CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 57168 0.7 0.968288
Target:  5'- aGGUCGUCggcgUGCCGcaGCAcgaAGcgGCGCAg -3'
miRNA:   3'- -CCAGUAGau--GCGGC--UGU---UCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 70792 0.7 0.968288
Target:  5'- uGGUCAUCguggACGCacagCGGCccgAAGAgGCGCAg -3'
miRNA:   3'- -CCAGUAGa---UGCG----GCUG---UUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 100085 0.66 0.997927
Target:  5'- cGGgcgCcUCgacCGCCGACGAGGacucGCGCGg -3'
miRNA:   3'- -CCa--GuAGau-GCGGCUGUUCUa---CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.