Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 44156 | 0.69 | 0.9806 |
Target: 5'- cGUCGUCgagcagcagcugGCGCCGucgguacuccGCGAGA-GCGCAg -3' miRNA: 3'- cCAGUAGa-----------UGCGGC----------UGUUCUaCGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 69848 | 0.69 | 0.981021 |
Target: 5'- aGGUCGaugacGCGCCGAUGAGGccgccGCGCAg -3' miRNA: 3'- -CCAGUaga--UGCGGCUGUUCUa----CGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 177773 | 0.69 | 0.981021 |
Target: 5'- cGGUCGUCgccaGgGCCGACGGGGccuguccgcuggUGgGCGu -3' miRNA: 3'- -CCAGUAGa---UgCGGCUGUUCU------------ACgCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 100219 | 0.69 | 0.981021 |
Target: 5'- aGGUCGU--AgGCCGGCGAGGUGgaGCu -3' miRNA: 3'- -CCAGUAgaUgCGGCUGUUCUACg-CGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 122738 | 0.68 | 0.983024 |
Target: 5'- --aCGUgaGCGCCGACAGGAgcCGCGg -3' miRNA: 3'- ccaGUAgaUGCGGCUGUUCUacGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 131237 | 0.68 | 0.983024 |
Target: 5'- cGUCG-CgacggcgAUGCCGACGGGAgcgGCGCu -3' miRNA: 3'- cCAGUaGa------UGCGGCUGUUCUa--CGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 151978 | 0.68 | 0.983024 |
Target: 5'- aGUUcUCUACGCaCGAgAGGAUGgUGCAc -3' miRNA: 3'- cCAGuAGAUGCG-GCUgUUCUAC-GCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 128431 | 0.68 | 0.983024 |
Target: 5'- cGGUCGgcgcaCUGCGCCagccaggugGACGAGAcGcCGCAg -3' miRNA: 3'- -CCAGUa----GAUGCGG---------CUGUUCUaC-GCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 122662 | 0.68 | 0.983024 |
Target: 5'- cGUCGUCUGCGgCGGUggGGUG-GCGu -3' miRNA: 3'- cCAGUAGAUGCgGCUGuuCUACgCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 58947 | 0.68 | 0.984862 |
Target: 5'- cGUCAUCggcgagcuCGCCGAgGGGucGUGCGUg -3' miRNA: 3'- cCAGUAGau------GCGGCUgUUC--UACGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 103869 | 0.68 | 0.984862 |
Target: 5'- uGGcgAUCaGCGCCGACAgggGGAUGgGCu -3' miRNA: 3'- -CCagUAGaUGCGGCUGU---UCUACgCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 205354 | 0.68 | 0.984862 |
Target: 5'- cGG-CAgCUGCGCCGuGCAcGAccUGCGCGg -3' miRNA: 3'- -CCaGUaGAUGCGGC-UGUuCU--ACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 121046 | 0.68 | 0.986545 |
Target: 5'- cGUCGccgCUGCGCCGGucCcAGGUGUGCu -3' miRNA: 3'- cCAGUa--GAUGCGGCU--GuUCUACGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 70285 | 0.68 | 0.988081 |
Target: 5'- aGGUCG---GCGCCGAagagaAAGcgGUGCAg -3' miRNA: 3'- -CCAGUagaUGCGGCUg----UUCuaCGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 113383 | 0.68 | 0.988081 |
Target: 5'- gGGUUAcggCggACGCCG-CGggcGGGUGCGCAa -3' miRNA: 3'- -CCAGUa--Ga-UGCGGCuGU---UCUACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 112134 | 0.68 | 0.988081 |
Target: 5'- cGG-UAUCUGCG-CGAgGAGcUGCGCGa -3' miRNA: 3'- -CCaGUAGAUGCgGCUgUUCuACGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 168651 | 0.68 | 0.988081 |
Target: 5'- cGGUCAUCgaggcAUGCCGACg----GCGCc -3' miRNA: 3'- -CCAGUAGa----UGCGGCUGuucuaCGCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 206614 | 0.68 | 0.988081 |
Target: 5'- cGGgcgcCGUCUACGCCGcCcuGGUGgGCc -3' miRNA: 3'- -CCa---GUAGAUGCGGCuGuuCUACgCGu -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 101770 | 0.68 | 0.988081 |
Target: 5'- gGGUgAUCUgcgGCGCCGuuuuGGA-GCGCAg -3' miRNA: 3'- -CCAgUAGA---UGCGGCugu-UCUaCGCGU- -5' |
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14280 | 3' | -51.8 | NC_003521.1 | + | 109392 | 0.68 | 0.989477 |
Target: 5'- aGGUCG-CggaagGCGCU--CAGGGUGCGCGg -3' miRNA: 3'- -CCAGUaGa----UGCGGcuGUUCUACGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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