miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 69848 0.69 0.981021
Target:  5'- aGGUCGaugacGCGCCGAUGAGGccgccGCGCAg -3'
miRNA:   3'- -CCAGUaga--UGCGGCUGUUCUa----CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 70285 0.68 0.988081
Target:  5'- aGGUCG---GCGCCGAagagaAAGcgGUGCAg -3'
miRNA:   3'- -CCAGUagaUGCGGCUg----UUCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 70692 0.76 0.729436
Target:  5'- cGG-CGUCUGCGCCG-CAAGcUGCGUc -3'
miRNA:   3'- -CCaGUAGAUGCGGCuGUUCuACGCGu -5'
14280 3' -51.8 NC_003521.1 + 70792 0.7 0.968288
Target:  5'- uGGUCAUCguggACGCacagCGGCccgAAGAgGCGCAg -3'
miRNA:   3'- -CCAGUAGa---UGCG----GCUG---UUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 71094 0.67 0.991884
Target:  5'- --cCAUCUACGCCGucuACGGGA--CGCAc -3'
miRNA:   3'- ccaGUAGAUGCGGC---UGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 74132 0.74 0.821844
Target:  5'- uGGUCAacgCUACGCaccgaGACGGGAUGCugucGCAg -3'
miRNA:   3'- -CCAGUa--GAUGCGg----CUGUUCUACG----CGU- -5'
14280 3' -51.8 NC_003521.1 + 76173 0.72 0.910457
Target:  5'- aGGUCGUCgcgggccugcgugagGCGCC-ACAGGAUGgGCc -3'
miRNA:   3'- -CCAGUAGa--------------UGCGGcUGUUCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 77849 0.66 0.997927
Target:  5'- uGGggAUCUugGCCaGACGGGcgaugGCGCc -3'
miRNA:   3'- -CCagUAGAugCGG-CUGUUCua---CGCGu -5'
14280 3' -51.8 NC_003521.1 + 85449 0.74 0.846611
Target:  5'- cGUCGUCcGCGCCGGCGAGAaagGUGg- -3'
miRNA:   3'- cCAGUAGaUGCGGCUGUUCUa--CGCgu -5'
14280 3' -51.8 NC_003521.1 + 91104 0.66 0.997927
Target:  5'- cGUCGUCgggcACGCCGAgCGAGA-GCuCAc -3'
miRNA:   3'- cCAGUAGa---UGCGGCU-GUUCUaCGcGU- -5'
14280 3' -51.8 NC_003521.1 + 91823 0.68 0.989477
Target:  5'- cGGUCuggAUCUggACgGgCGugAAGGUGCGCGc -3'
miRNA:   3'- -CCAG---UAGA--UG-CgGCugUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 96772 0.7 0.965149
Target:  5'- cGGUCgccGUCgcCGCCGGCAgcagcGGcgGCGCu -3'
miRNA:   3'- -CCAG---UAGauGCGGCUGU-----UCuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 98652 0.66 0.997927
Target:  5'- cGG-CGUCgACGaCGGCGAGcuUGCGCGg -3'
miRNA:   3'- -CCaGUAGaUGCgGCUGUUCu-ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 100085 0.66 0.997927
Target:  5'- cGGgcgCcUCgacCGCCGACGAGGacucGCGCGg -3'
miRNA:   3'- -CCa--GuAGau-GCGGCUGUUCUa---CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 100219 0.69 0.981021
Target:  5'- aGGUCGU--AgGCCGGCGAGGUGgaGCu -3'
miRNA:   3'- -CCAGUAgaUgCGGCUGUUCUACg-CGu -5'
14280 3' -51.8 NC_003521.1 + 101184 0.67 0.991213
Target:  5'- cGG-CGUCcGCGcCCGGCGggcggaucuugaccgAGAUGUGCAc -3'
miRNA:   3'- -CCaGUAGaUGC-GGCUGU---------------UCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 101770 0.68 0.988081
Target:  5'- gGGUgAUCUgcgGCGCCGuuuuGGA-GCGCAg -3'
miRNA:   3'- -CCAgUAGA---UGCGGCugu-UCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 102326 0.69 0.973955
Target:  5'- cGUCGUCgugcgcguggGCGCCGACGccgGGGUG-GCGg -3'
miRNA:   3'- cCAGUAGa---------UGCGGCUGU---UCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 103869 0.68 0.984862
Target:  5'- uGGcgAUCaGCGCCGACAgggGGAUGgGCu -3'
miRNA:   3'- -CCagUAGaUGCGGCUGU---UCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 103936 0.68 0.989477
Target:  5'- aGGUagagCAUCUGCGagccCGAGAUGCGCu -3'
miRNA:   3'- -CCA----GUAGAUGCggcuGUUCUACGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.