miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 1304 0.66 0.996034
Target:  5'- uGGuUCcgCUacgGCGCCGGCGAcGUGgCGCGg -3'
miRNA:   3'- -CC-AGuaGA---UGCGGCUGUUcUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 4664 0.66 0.997927
Target:  5'- cGUCcgCUAgguccCGCCGGCGAcGUcGCGCGg -3'
miRNA:   3'- cCAGuaGAU-----GCGGCUGUUcUA-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 11566 0.67 0.992912
Target:  5'- cGcCGUCgUGCGCCGgacucuGCGGGGucUGCGCAa -3'
miRNA:   3'- cCaGUAG-AUGCGGC------UGUUCU--ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 12062 1.11 0.008595
Target:  5'- aGGUCAUCUACGCCGACAAGAUGCGCAc -3'
miRNA:   3'- -CCAGUAGAUGCGGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 15644 0.74 0.857585
Target:  5'- aGGcCAUCUucgagcggcagcacaGCGCCGAgGuGGUGCGCGa -3'
miRNA:   3'- -CCaGUAGA---------------UGCGGCUgUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 19781 0.67 0.990742
Target:  5'- cGGUCAUCUACGCCauGAucgcCAcGGUGgUGCu -3'
miRNA:   3'- -CCAGUAGAUGCGG--CU----GUuCUAC-GCGu -5'
14280 3' -51.8 NC_003521.1 + 28729 0.66 0.996605
Target:  5'- uGGUgGcgC-ACGCCGACAaccAGAcGCGCGc -3'
miRNA:   3'- -CCAgUa-GaUGCGGCUGU---UCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 33300 0.66 0.996605
Target:  5'- -cUCGUacAUGCCGGCgAAGGUGUGCu -3'
miRNA:   3'- ccAGUAgaUGCGGCUG-UUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 39568 0.72 0.909857
Target:  5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3'
miRNA:   3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 39754 0.66 0.995386
Target:  5'- cGGggAUCUGCGCCaGCAGGAacCGCu -3'
miRNA:   3'- -CCagUAGAUGCGGcUGUUCUacGCGu -5'
14280 3' -51.8 NC_003521.1 + 42683 0.71 0.946174
Target:  5'- aGUCcUCagaGCCGcCGAGAUGCGCGa -3'
miRNA:   3'- cCAGuAGaugCGGCuGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 44156 0.69 0.9806
Target:  5'- cGUCGUCgagcagcagcugGCGCCGucgguacuccGCGAGA-GCGCAg -3'
miRNA:   3'- cCAGUAGa-----------UGCGGC----------UGUUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 51471 0.72 0.903724
Target:  5'- cGGUCAUCUGCcCCGGCAGcccgaggaagacGAUGaugaGCAg -3'
miRNA:   3'- -CCAGUAGAUGcGGCUGUU------------CUACg---CGU- -5'
14280 3' -51.8 NC_003521.1 + 53414 0.67 0.991884
Target:  5'- uGGcgCGUCggcAgGUCGGCAAGGUGCGgAg -3'
miRNA:   3'- -CCa-GUAGa--UgCGGCUGUUCUACGCgU- -5'
14280 3' -51.8 NC_003521.1 + 57168 0.7 0.968288
Target:  5'- aGGUCGUCggcgUGCCGcaGCAcgaAGcgGCGCAg -3'
miRNA:   3'- -CCAGUAGau--GCGGC--UGU---UCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 58947 0.68 0.984862
Target:  5'- cGUCAUCggcgagcuCGCCGAgGGGucGUGCGUg -3'
miRNA:   3'- cCAGUAGau------GCGGCUgUUC--UACGCGu -5'
14280 3' -51.8 NC_003521.1 + 59361 0.72 0.909857
Target:  5'- gGGcCGUCUGCGCCGACuGGGacaGCAu -3'
miRNA:   3'- -CCaGUAGAUGCGGCUGuUCUacgCGU- -5'
14280 3' -51.8 NC_003521.1 + 61452 0.67 0.990742
Target:  5'- aGGUCAUCcgcACGCgCGuCAagcAGGUGaCGCAa -3'
miRNA:   3'- -CCAGUAGa--UGCG-GCuGU---UCUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 62285 0.7 0.958228
Target:  5'- cGUCAUCaacgacggcACGCgGuACGAGAUGUGCAu -3'
miRNA:   3'- cCAGUAGa--------UGCGgC-UGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 62614 0.66 0.996034
Target:  5'- aGGUgGUCaUGCuGCUGACGAGcuucgGCGCc -3'
miRNA:   3'- -CCAgUAG-AUG-CGGCUGUUCua---CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.