miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 239981 0.66 0.995386
Target:  5'- cGGggAUCUGCGCCaGCAGGAacCGCu -3'
miRNA:   3'- -CCagUAGAUGCGGcUGUUCUacGCGu -5'
14280 3' -51.8 NC_003521.1 + 239795 0.72 0.909857
Target:  5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3'
miRNA:   3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 234856 0.66 0.995973
Target:  5'- uGGgCAUCgGCGUCguguucgGAUGAGAUGCGCu -3'
miRNA:   3'- -CCaGUAGaUGCGG-------CUGUUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 229220 0.71 0.95042
Target:  5'- uGUCgcgaGUCUugGCaCGugAAGAucuUGCGCAg -3'
miRNA:   3'- cCAG----UAGAugCG-GCugUUCU---ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 228963 0.67 0.990742
Target:  5'- aGUCcUCcuCGuCCGAgGAGGUGCGCGg -3'
miRNA:   3'- cCAGuAGauGC-GGCUgUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 223684 0.66 0.997107
Target:  5'- gGGUCGggCgaagcGCGCCGGCAGGAU-CGaCGa -3'
miRNA:   3'- -CCAGUa-Ga----UGCGGCUGUUCUAcGC-GU- -5'
14280 3' -51.8 NC_003521.1 + 216811 0.67 0.993833
Target:  5'- cGUCAggUUACGCCGGau-GgcGCGCAg -3'
miRNA:   3'- cCAGUa-GAUGCGGCUguuCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 214826 0.66 0.996814
Target:  5'- gGGUCugcggcgCUGCGgcuucaucaccgugcCCGACGAGGUGCcCAa -3'
miRNA:   3'- -CCAGua-----GAUGC---------------GGCUGUUCUACGcGU- -5'
14280 3' -51.8 NC_003521.1 + 211387 0.66 0.996034
Target:  5'- aGGcCGUCagGCGCCGGCucucGUGCaGCAg -3'
miRNA:   3'- -CCaGUAGa-UGCGGCUGuuc-UACG-CGU- -5'
14280 3' -51.8 NC_003521.1 + 210157 0.72 0.907432
Target:  5'- aGGUCAUCgcgcggaaaauagGCGCCauGACGAGcagGCGCGc -3'
miRNA:   3'- -CCAGUAGa------------UGCGG--CUGUUCua-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 209543 0.66 0.995386
Target:  5'- cGGUUAU--GCGcCCGGCGGGGUG-GCGg -3'
miRNA:   3'- -CCAGUAgaUGC-GGCUGUUCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 208185 0.72 0.903724
Target:  5'- cGUCGUCUGCGCCGcCGcGAUGaCGgAa -3'
miRNA:   3'- cCAGUAGAUGCGGCuGUuCUAC-GCgU- -5'
14280 3' -51.8 NC_003521.1 + 208048 0.69 0.978847
Target:  5'- gGGUC-UCU-CGCCGugAGGAaGCGgGa -3'
miRNA:   3'- -CCAGuAGAuGCGGCugUUCUaCGCgU- -5'
14280 3' -51.8 NC_003521.1 + 206614 0.68 0.988081
Target:  5'- cGGgcgcCGUCUACGCCGcCcuGGUGgGCc -3'
miRNA:   3'- -CCa---GUAGAUGCGGCuGuuCUACgCGu -5'
14280 3' -51.8 NC_003521.1 + 205354 0.68 0.984862
Target:  5'- cGG-CAgCUGCGCCGuGCAcGAccUGCGCGg -3'
miRNA:   3'- -CCaGUaGAUGCGGC-UGUuCU--ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 201532 0.66 0.996034
Target:  5'- uGGuUCcgCUacgGCGCCGGCGAcGUGgCGCGg -3'
miRNA:   3'- -CC-AGuaGA---UGCGGCUGUUcUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 197848 0.81 0.508433
Target:  5'- aGGUCGUCgguggGCGCCGGCGGGucGCGCu -3'
miRNA:   3'- -CCAGUAGa----UGCGGCUGUUCuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 195207 0.68 0.989477
Target:  5'- uGGcCGUCUGCGUCGGCGcuGAUGuCGg- -3'
miRNA:   3'- -CCaGUAGAUGCGGCUGUu-CUAC-GCgu -5'
14280 3' -51.8 NC_003521.1 + 194941 0.66 0.997107
Target:  5'- cGUCGUCUuggACGCCGGCGcuA-GCGUc -3'
miRNA:   3'- cCAGUAGA---UGCGGCUGUucUaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 192025 0.66 0.997927
Target:  5'- cGUCAgguUCUGCaccGCCGGCG---UGCGCGg -3'
miRNA:   3'- cCAGU---AGAUG---CGGCUGUucuACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.