miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 69848 0.69 0.981021
Target:  5'- aGGUCGaugacGCGCCGAUGAGGccgccGCGCAg -3'
miRNA:   3'- -CCAGUaga--UGCGGCUGUUCUa----CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 229220 0.71 0.95042
Target:  5'- uGUCgcgaGUCUugGCaCGugAAGAucuUGCGCAg -3'
miRNA:   3'- cCAG----UAGAugCG-GCugUUCU---ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 116797 0.7 0.954437
Target:  5'- uGGcCGUCUACGgccgcgaccCCGACuGGGUGCuGCAg -3'
miRNA:   3'- -CCaGUAGAUGC---------GGCUGuUCUACG-CGU- -5'
14280 3' -51.8 NC_003521.1 + 96772 0.7 0.965149
Target:  5'- cGGUCgccGUCgcCGCCGGCAgcagcGGcgGCGCu -3'
miRNA:   3'- -CCAG---UAGauGCGGCUGU-----UCuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 70792 0.7 0.968288
Target:  5'- uGGUCAUCguggACGCacagCGGCccgAAGAgGCGCAg -3'
miRNA:   3'- -CCAGUAGa---UGCG----GCUG---UUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 57168 0.7 0.968288
Target:  5'- aGGUCGUCggcgUGCCGcaGCAcgaAGcgGCGCAg -3'
miRNA:   3'- -CCAGUAGau--GCGGC--UGU---UCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 136255 0.7 0.969486
Target:  5'- cGG-CcgCUACGCCGACGuGAUucaggaggugguggaGCGCGa -3'
miRNA:   3'- -CCaGuaGAUGCGGCUGUuCUA---------------CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 138589 0.69 0.971221
Target:  5'- cGG-CAUCU-CGCCGgacaccauguACGAGGUGUGCc -3'
miRNA:   3'- -CCaGUAGAuGCGGC----------UGUUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 102326 0.69 0.973955
Target:  5'- cGUCGUCgugcgcguggGCGCCGACGccgGGGUG-GCGg -3'
miRNA:   3'- cCAGUAGa---------UGCGGCUGU---UCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 42683 0.71 0.946174
Target:  5'- aGUCcUCagaGCCGcCGAGAUGCGCGa -3'
miRNA:   3'- cCAGuAGaugCGGCuGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 125007 0.72 0.926843
Target:  5'- gGGUCAUgUUGCGCa-GCAGGcUGCGCAu -3'
miRNA:   3'- -CCAGUA-GAUGCGgcUGUUCuACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 129419 0.72 0.915756
Target:  5'- gGGUCGU---CGCCGuAguAGAUGCGCAg -3'
miRNA:   3'- -CCAGUAgauGCGGC-UguUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 85449 0.74 0.846611
Target:  5'- cGUCGUCcGCGCCGGCGAGAaagGUGg- -3'
miRNA:   3'- cCAGUAGaUGCGGCUGUUCUa--CGCgu -5'
14280 3' -51.8 NC_003521.1 + 138002 0.74 0.854489
Target:  5'- aGGUCgAUCU-CGgCGuCGAGGUGCGCGu -3'
miRNA:   3'- -CCAG-UAGAuGCgGCuGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 136800 0.73 0.883942
Target:  5'- cGGUCAcgCUGCccGCCGACGAccccggcGUGCGCAu -3'
miRNA:   3'- -CCAGUa-GAUG--CGGCUGUUc------UACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 129987 0.73 0.883942
Target:  5'- cGUCGcugccgCUGCGCCGGCGGcGgcGCGCAa -3'
miRNA:   3'- cCAGUa-----GAUGCGGCUGUU-CuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 51471 0.72 0.903724
Target:  5'- cGGUCAUCUGCcCCGGCAGcccgaggaagacGAUGaugaGCAg -3'
miRNA:   3'- -CCAGUAGAUGcGGCUGUU------------CUACg---CGU- -5'
14280 3' -51.8 NC_003521.1 + 149326 0.72 0.903724
Target:  5'- cGUgGUCUcACGCCucuuCGAGGUGCGCGa -3'
miRNA:   3'- cCAgUAGA-UGCGGcu--GUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 239795 0.72 0.909857
Target:  5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3'
miRNA:   3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 76173 0.72 0.910457
Target:  5'- aGGUCGUCgcgggccugcgugagGCGCC-ACAGGAUGgGCc -3'
miRNA:   3'- -CCAGUAGa--------------UGCGGcUGUUCUACgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.