miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 12062 1.11 0.008595
Target:  5'- aGGUCAUCUACGCCGACAAGAUGCGCAc -3'
miRNA:   3'- -CCAGUAGAUGCGGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 127661 0.69 0.976494
Target:  5'- cGGccCAUCUugGCCGcgaGCAGGcgGCGgGu -3'
miRNA:   3'- -CCa-GUAGAugCGGC---UGUUCuaCGCgU- -5'
14280 3' -51.8 NC_003521.1 + 208048 0.69 0.978847
Target:  5'- gGGUC-UCU-CGCCGugAGGAaGCGgGa -3'
miRNA:   3'- -CCAGuAGAuGCGGCugUUCUaCGCgU- -5'
14280 3' -51.8 NC_003521.1 + 100085 0.66 0.997927
Target:  5'- cGGgcgCcUCgacCGCCGACGAGGacucGCGCGg -3'
miRNA:   3'- -CCa--GuAGau-GCGGCUGUUCUa---CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 74132 0.74 0.821844
Target:  5'- uGGUCAacgCUACGCaccgaGACGGGAUGCugucGCAg -3'
miRNA:   3'- -CCAGUa--GAUGCGg----CUGUUCUACG----CGU- -5'
14280 3' -51.8 NC_003521.1 + 15644 0.74 0.857585
Target:  5'- aGGcCAUCUucgagcggcagcacaGCGCCGAgGuGGUGCGCGa -3'
miRNA:   3'- -CCaGUAGA---------------UGCGGCUgUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 208185 0.72 0.903724
Target:  5'- cGUCGUCUGCGCCGcCGcGAUGaCGgAa -3'
miRNA:   3'- cCAGUAGAUGCGGCuGUuCUAC-GCgU- -5'
14280 3' -51.8 NC_003521.1 + 210157 0.72 0.907432
Target:  5'- aGGUCAUCgcgcggaaaauagGCGCCauGACGAGcagGCGCGc -3'
miRNA:   3'- -CCAGUAGa------------UGCGG--CUGUUCua-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 152491 0.72 0.921418
Target:  5'- gGGUCAgucgCUGCGCuuCGGCGAGAccCGCAu -3'
miRNA:   3'- -CCAGUa---GAUGCG--GCUGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 170817 0.69 0.975752
Target:  5'- uGGUaCcgCUGCGCucgcugggacugcaCGACGAGAcGCGCGu -3'
miRNA:   3'- -CCA-GuaGAUGCG--------------GCUGUUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 62285 0.7 0.958228
Target:  5'- cGUCAUCaacgacggcACGCgGuACGAGAUGUGCAu -3'
miRNA:   3'- cCAGUAGa--------UGCGgC-UGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 39568 0.72 0.909857
Target:  5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3'
miRNA:   3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 137027 0.86 0.265834
Target:  5'- cGGUCAUCUcgccggagcACGgCGGCGAGGUGCGCGa -3'
miRNA:   3'- -CCAGUAGA---------UGCgGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 125232 0.69 0.971221
Target:  5'- uGGUacuUUUACcugaucgguaCCGGCAAGAUGCGCAu -3'
miRNA:   3'- -CCAgu-AGAUGc---------GGCUGUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 197848 0.81 0.508433
Target:  5'- aGGUCGUCgguggGCGCCGGCGGGucGCGCu -3'
miRNA:   3'- -CCAGUAGa----UGCGGCUGUUCuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 59361 0.72 0.909857
Target:  5'- gGGcCGUCUGCGCCGACuGGGacaGCAu -3'
miRNA:   3'- -CCaGUAGAUGCGGCUGuUCUacgCGU- -5'
14280 3' -51.8 NC_003521.1 + 170110 0.69 0.971221
Target:  5'- cGGUaCAUCcggcgcagGCGCCGACGcagcuuGcgGCGCAg -3'
miRNA:   3'- -CCA-GUAGa-------UGCGGCUGUu-----CuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 117638 0.69 0.976494
Target:  5'- uGUCGUuccgccugcgaCUGCGCCG-CGAGAcggUGCGCc -3'
miRNA:   3'- cCAGUA-----------GAUGCGGCuGUUCU---ACGCGu -5'
14280 3' -51.8 NC_003521.1 + 119467 0.76 0.739203
Target:  5'- uGGUCAUCaa-GCCgGGCAAGAcgGCGCAc -3'
miRNA:   3'- -CCAGUAGaugCGG-CUGUUCUa-CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 185106 0.73 0.890763
Target:  5'- aGG-CG-CUgcGCGCCGACAugcuggagcacgGGAUGCGCAa -3'
miRNA:   3'- -CCaGUaGA--UGCGGCUGU------------UCUACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.