Results 21 - 40 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 122662 | 0.68 | 0.983024 |
Target: 5'- cGUCGUCUGCGgCGGUggGGUG-GCGu -3' miRNA: 3'- cCAGUAGAUGCgGCUGuuCUACgCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 208048 | 0.69 | 0.978847 |
Target: 5'- gGGUC-UCU-CGCCGugAGGAaGCGgGa -3' miRNA: 3'- -CCAGuAGAuGCGGCugUUCUaCGCgU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 39568 | 0.72 | 0.909857 |
Target: 5'- cGGcCAUCUGgcUGCgCGGCGuGAUGCGCGc -3' miRNA: 3'- -CCaGUAGAU--GCG-GCUGUuCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 119467 | 0.76 | 0.739203 |
Target: 5'- uGGUCAUCaa-GCCgGGCAAGAcgGCGCAc -3' miRNA: 3'- -CCAGUAGaugCGG-CUGUUCUa-CGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 19781 | 0.67 | 0.990742 |
Target: 5'- cGGUCAUCUACGCCauGAucgcCAcGGUGgUGCu -3' miRNA: 3'- -CCAGUAGAUGCGG--CU----GUuCUAC-GCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 206614 | 0.68 | 0.988081 |
Target: 5'- cGGgcgcCGUCUACGCCGcCcuGGUGgGCc -3' miRNA: 3'- -CCa---GUAGAUGCGGCuGuuCUACgCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 127661 | 0.69 | 0.976494 |
Target: 5'- cGGccCAUCUugGCCGcgaGCAGGcgGCGgGu -3' miRNA: 3'- -CCa-GUAGAugCGGC---UGUUCuaCGCgU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 197848 | 0.81 | 0.508433 |
Target: 5'- aGGUCGUCgguggGCGCCGGCGGGucGCGCu -3' miRNA: 3'- -CCAGUAGa----UGCGGCUGUUCuaCGCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 101770 | 0.68 | 0.988081 |
Target: 5'- gGGUgAUCUgcgGCGCCGuuuuGGA-GCGCAg -3' miRNA: 3'- -CCAgUAGA---UGCGGCugu-UCUaCGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 137027 | 0.86 | 0.265834 |
Target: 5'- cGGUCAUCUcgccggagcACGgCGGCGAGGUGCGCGa -3' miRNA: 3'- -CCAGUAGA---------UGCgGCUGUUCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 117638 | 0.69 | 0.976494 |
Target: 5'- uGUCGUuccgccugcgaCUGCGCCG-CGAGAcggUGCGCc -3' miRNA: 3'- cCAGUA-----------GAUGCGGCuGUUCU---ACGCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 128431 | 0.68 | 0.983024 |
Target: 5'- cGGUCGgcgcaCUGCGCCagccaggugGACGAGAcGcCGCAg -3' miRNA: 3'- -CCAGUa----GAUGCGG---------CUGUUCUaC-GCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 125232 | 0.69 | 0.971221 |
Target: 5'- uGGUacuUUUACcugaucgguaCCGGCAAGAUGCGCAu -3' miRNA: 3'- -CCAgu-AGAUGc---------GGCUGUUCUACGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 152491 | 0.72 | 0.921418 |
Target: 5'- gGGUCAgucgCUGCGCuuCGGCGAGAccCGCAu -3' miRNA: 3'- -CCAGUa---GAUGCG--GCUGUUCUacGCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 208185 | 0.72 | 0.903724 |
Target: 5'- cGUCGUCUGCGCCGcCGcGAUGaCGgAa -3' miRNA: 3'- cCAGUAGAUGCGGCuGUuCUAC-GCgU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 74132 | 0.74 | 0.821844 |
Target: 5'- uGGUCAacgCUACGCaccgaGACGGGAUGCugucGCAg -3' miRNA: 3'- -CCAGUa--GAUGCGg----CUGUUCUACG----CGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 164252 | 0.67 | 0.993833 |
Target: 5'- gGGUCAUCUACGggGACAcGGAcaGCGUg -3' miRNA: 3'- -CCAGUAGAUGCggCUGU-UCUa-CGCGu -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 53414 | 0.67 | 0.991884 |
Target: 5'- uGGcgCGUCggcAgGUCGGCAAGGUGCGgAg -3' miRNA: 3'- -CCa-GUAGa--UgCGGCUGUUCUACGCgU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 162227 | 0.68 | 0.989477 |
Target: 5'- gGGUgGUagcgccgacgGCGCUGGCGGGGUGgGCGu -3' miRNA: 3'- -CCAgUAga--------UGCGGCUGUUCUACgCGU- -5' |
|||||||
14280 | 3' | -51.8 | NC_003521.1 | + | 103936 | 0.68 | 0.989477 |
Target: 5'- aGGUagagCAUCUGCGagccCGAGAUGCGCu -3' miRNA: 3'- -CCA----GUAGAUGCggcuGUUCUACGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home