miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 185896 0.66 0.995655
Target:  5'- cGUCAcuuuUCUgcccACGCCGGCGcugauccugcaaacGGUGCGCAg -3'
miRNA:   3'- cCAGU----AGA----UGCGGCUGUu-------------CUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 185322 0.66 0.997781
Target:  5'- uGGUCAaCUACGCCuGGCuggagcaccAGGAggacggcaaggcgGCGCAg -3'
miRNA:   3'- -CCAGUaGAUGCGG-CUG---------UUCUa------------CGCGU- -5'
14280 3' -51.8 NC_003521.1 + 185106 0.73 0.890763
Target:  5'- aGG-CG-CUgcGCGCCGACAugcuggagcacgGGAUGCGCAa -3'
miRNA:   3'- -CCaGUaGA--UGCGGCUGU------------UCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 177773 0.69 0.981021
Target:  5'- cGGUCGUCgccaGgGCCGACGGGGccuguccgcuggUGgGCGu -3'
miRNA:   3'- -CCAGUAGa---UgCGGCUGUUCU------------ACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 175784 0.67 0.990376
Target:  5'- cGUCAUUa--GCCGGggcugcacgcgggcCAGGAUGCGCGu -3'
miRNA:   3'- cCAGUAGaugCGGCU--------------GUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 174138 0.66 0.997107
Target:  5'- aGGUCA---ACGCCGACAGcacGUGaCGCu -3'
miRNA:   3'- -CCAGUagaUGCGGCUGUUc--UAC-GCGu -5'
14280 3' -51.8 NC_003521.1 + 171824 0.66 0.996605
Target:  5'- aGUC-UCUuCGCCGACAAGAa-CGCc -3'
miRNA:   3'- cCAGuAGAuGCGGCUGUUCUacGCGu -5'
14280 3' -51.8 NC_003521.1 + 170817 0.69 0.975752
Target:  5'- uGGUaCcgCUGCGCucgcugggacugcaCGACGAGAcGCGCGu -3'
miRNA:   3'- -CCA-GuaGAUGCG--------------GCUGUUCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 170110 0.69 0.971221
Target:  5'- cGGUaCAUCcggcgcagGCGCCGACGcagcuuGcgGCGCAg -3'
miRNA:   3'- -CCA-GUAGa-------UGCGGCUGUu-----CuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 169048 0.66 0.996034
Target:  5'- uGGUCGU-----CCGGgGGGAUGCGCAa -3'
miRNA:   3'- -CCAGUAgaugcGGCUgUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 168651 0.68 0.988081
Target:  5'- cGGUCAUCgaggcAUGCCGACg----GCGCc -3'
miRNA:   3'- -CCAGUAGa----UGCGGCUGuucuaCGCGu -5'
14280 3' -51.8 NC_003521.1 + 164929 0.66 0.997927
Target:  5'- --cCAUCcACGCCGACAaguacuucgaucAGGUGCuCAa -3'
miRNA:   3'- ccaGUAGaUGCGGCUGU------------UCUACGcGU- -5'
14280 3' -51.8 NC_003521.1 + 164252 0.67 0.993833
Target:  5'- gGGUCAUCUACGggGACAcGGAcaGCGUg -3'
miRNA:   3'- -CCAGUAGAUGCggCUGU-UCUa-CGCGu -5'
14280 3' -51.8 NC_003521.1 + 162227 0.68 0.989477
Target:  5'- gGGUgGUagcgccgacgGCGCUGGCGGGGUGgGCGu -3'
miRNA:   3'- -CCAgUAga--------UGCGGCUGUUCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 152491 0.72 0.921418
Target:  5'- gGGUCAgucgCUGCGCuuCGGCGAGAccCGCAu -3'
miRNA:   3'- -CCAGUa---GAUGCG--GCUGUUCUacGCGU- -5'
14280 3' -51.8 NC_003521.1 + 151978 0.68 0.983024
Target:  5'- aGUUcUCUACGCaCGAgAGGAUGgUGCAc -3'
miRNA:   3'- cCAGuAGAUGCG-GCUgUUCUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 150627 0.66 0.997927
Target:  5'- cGG-CGgcugCUGCGCaGGCGGGGgcgUGCGCGa -3'
miRNA:   3'- -CCaGUa---GAUGCGgCUGUUCU---ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 149750 0.67 0.992912
Target:  5'- aGGUCuUCUGCGgCGAgGgcGGccGCGCGg -3'
miRNA:   3'- -CCAGuAGAUGCgGCUgU--UCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 149326 0.72 0.903724
Target:  5'- cGUgGUCUcACGCCucuuCGAGGUGCGCGa -3'
miRNA:   3'- cCAgUAGA-UGCGGcu--GUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 138589 0.69 0.971221
Target:  5'- cGG-CAUCU-CGCCGgacaccauguACGAGGUGUGCc -3'
miRNA:   3'- -CCaGUAGAuGCGGC----------UGUUCUACGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.