miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 3' -51.8 NC_003521.1 + 105362 0.66 0.996605
Target:  5'- --gCGUCcGCGUCGACGGGggGCGg- -3'
miRNA:   3'- ccaGUAGaUGCGGCUGUUCuaCGCgu -5'
14280 3' -51.8 NC_003521.1 + 33300 0.66 0.996605
Target:  5'- -cUCGUacAUGCCGGCgAAGGUGUGCu -3'
miRNA:   3'- ccAGUAgaUGCGGCUG-UUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 137970 0.66 0.996605
Target:  5'- ------gUAUGCCGACGuGGUGCGCu -3'
miRNA:   3'- ccaguagAUGCGGCUGUuCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 109566 0.66 0.996605
Target:  5'- uGGUCGUCggcuagcAUGCgCGugAAG-UGCGCc -3'
miRNA:   3'- -CCAGUAGa------UGCG-GCugUUCuACGCGu -5'
14280 3' -51.8 NC_003521.1 + 28729 0.66 0.996605
Target:  5'- uGGUgGcgC-ACGCCGACAaccAGAcGCGCGc -3'
miRNA:   3'- -CCAgUa-GaUGCGGCUGU---UCUaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 1304 0.66 0.996034
Target:  5'- uGGuUCcgCUacgGCGCCGGCGAcGUGgCGCGg -3'
miRNA:   3'- -CC-AGuaGA---UGCGGCUGUUcUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 62614 0.66 0.996034
Target:  5'- aGGUgGUCaUGCuGCUGACGAGcuucgGCGCc -3'
miRNA:   3'- -CCAgUAG-AUG-CGGCUGUUCua---CGCGu -5'
14280 3' -51.8 NC_003521.1 + 201532 0.66 0.996034
Target:  5'- uGGuUCcgCUacgGCGCCGGCGAcGUGgCGCGg -3'
miRNA:   3'- -CC-AGuaGA---UGCGGCUGUUcUAC-GCGU- -5'
14280 3' -51.8 NC_003521.1 + 169048 0.66 0.996034
Target:  5'- uGGUCGU-----CCGGgGGGAUGCGCAa -3'
miRNA:   3'- -CCAGUAgaugcGGCUgUUCUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 211387 0.66 0.996034
Target:  5'- aGGcCGUCagGCGCCGGCucucGUGCaGCAg -3'
miRNA:   3'- -CCaGUAGa-UGCGGCUGuuc-UACG-CGU- -5'
14280 3' -51.8 NC_003521.1 + 123577 0.66 0.996034
Target:  5'- aGUCGUgCaGCGCCG-CGuGAUGCGUg -3'
miRNA:   3'- cCAGUA-GaUGCGGCuGUuCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 234856 0.66 0.995973
Target:  5'- uGGgCAUCgGCGUCguguucgGAUGAGAUGCGCu -3'
miRNA:   3'- -CCaGUAGaUGCGG-------CUGUUCUACGCGu -5'
14280 3' -51.8 NC_003521.1 + 185896 0.66 0.995655
Target:  5'- cGUCAcuuuUCUgcccACGCCGGCGcugauccugcaaacGGUGCGCAg -3'
miRNA:   3'- cCAGU----AGA----UGCGGCUGUu-------------CUACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 39754 0.66 0.995386
Target:  5'- cGGggAUCUGCGCCaGCAGGAacCGCu -3'
miRNA:   3'- -CCagUAGAUGCGGcUGUUCUacGCGu -5'
14280 3' -51.8 NC_003521.1 + 209543 0.66 0.995386
Target:  5'- cGGUUAU--GCGcCCGGCGGGGUG-GCGg -3'
miRNA:   3'- -CCAGUAgaUGC-GGCUGUUCUACgCGU- -5'
14280 3' -51.8 NC_003521.1 + 239981 0.66 0.995386
Target:  5'- cGGggAUCUGCGCCaGCAGGAacCGCu -3'
miRNA:   3'- -CCagUAGAUGCGGcUGUUCUacGCGu -5'
14280 3' -51.8 NC_003521.1 + 164252 0.67 0.993833
Target:  5'- gGGUCAUCUACGggGACAcGGAcaGCGUg -3'
miRNA:   3'- -CCAGUAGAUGCggCUGU-UCUa-CGCGu -5'
14280 3' -51.8 NC_003521.1 + 216811 0.67 0.993833
Target:  5'- cGUCAggUUACGCCGGau-GgcGCGCAg -3'
miRNA:   3'- cCAGUa-GAUGCGGCUguuCuaCGCGU- -5'
14280 3' -51.8 NC_003521.1 + 11566 0.67 0.992912
Target:  5'- cGcCGUCgUGCGCCGgacucuGCGGGGucUGCGCAa -3'
miRNA:   3'- cCaGUAG-AUGCGGC------UGUUCU--ACGCGU- -5'
14280 3' -51.8 NC_003521.1 + 149750 0.67 0.992912
Target:  5'- aGGUCuUCUGCGgCGAgGgcGGccGCGCGg -3'
miRNA:   3'- -CCAGuAGAUGCgGCUgU--UCuaCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.