miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 89173 0.66 0.999999
Target:  5'- -gGGCCGUgggccUGGcccuGCugGACGUGCu -3'
miRNA:   3'- caUUGGCAauu--ACU----CGugCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 235251 0.67 0.999994
Target:  5'- -cGGCCGgUGAUGAcaGCGACGgACGg -3'
miRNA:   3'- caUUGGCaAUUACUcgUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 212192 0.69 0.999848
Target:  5'- gGUAAUaguaGUUGAUGAagACGGCGUGCa -3'
miRNA:   3'- -CAUUGg---CAAUUACUcgUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 8532 0.69 0.999848
Target:  5'- uGUGcCCGgaccGUGGGCGCGACG-ACa -3'
miRNA:   3'- -CAUuGGCaau-UACUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 186495 0.69 0.999805
Target:  5'- cGUGcACCGUgcgccuggugAcgGAGCACGACGcGCu -3'
miRNA:   3'- -CAU-UGGCAa---------UuaCUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 147848 0.69 0.999883
Target:  5'- -cAGCCGggGGUGcaGGCGCGagaaguggaacaGCGUGCGc -3'
miRNA:   3'- caUUGGCaaUUAC--UCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 152423 0.71 0.999078
Target:  5'- --cGCgGUUgcaGAUGAGCuCGACGUACu -3'
miRNA:   3'- cauUGgCAA---UUACUCGuGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 101210 0.66 0.999999
Target:  5'- uUGACCGa-GAUGuGCACGuuuuugGCGUugGa -3'
miRNA:   3'- cAUUGGCaaUUACuCGUGC------UGCAugC- -5'
14283 3' -46.4 NC_003521.1 + 198028 0.66 0.999999
Target:  5'- cGUGGCCGcUGccGAGCGUGA-GUACGa -3'
miRNA:   3'- -CAUUGGCaAUuaCUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 104693 0.66 0.999999
Target:  5'- -gGGCCGUgggc-GGCGuCGACGUGCc -3'
miRNA:   3'- caUUGGCAauuacUCGU-GCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 66367 0.67 0.999992
Target:  5'- cGUGGCCGgcGGcGAGCAgCGacaccagcGCGUGCGu -3'
miRNA:   3'- -CAUUGGCaaUUaCUCGU-GC--------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 76054 0.67 0.999989
Target:  5'- -gGGCCGccagacgcUUGAUGAcgGCGAUGUGCGg -3'
miRNA:   3'- caUUGGC--------AAUUACUcgUGCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 54290 0.67 0.999986
Target:  5'- -aGGCCGUUGcgGcuggccacguagagcAGCGCGuCGUGCu -3'
miRNA:   3'- caUUGGCAAUuaC---------------UCGUGCuGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 184147 0.67 0.999984
Target:  5'- uUGAUCGUgcAUGGGCgaGCGACG-ACa -3'
miRNA:   3'- cAUUGGCAauUACUCG--UGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 116465 0.7 0.999752
Target:  5'- -cGGCCG-UGGUGGGaCACGugGcgGCGa -3'
miRNA:   3'- caUUGGCaAUUACUC-GUGCugCa-UGC- -5'
14283 3' -46.4 NC_003521.1 + 214808 0.66 0.999997
Target:  5'- --cGCCGUcGGgcgccGGGCGCGGCG-ACGg -3'
miRNA:   3'- cauUGGCAaUUa----CUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 35134 0.66 0.999998
Target:  5'- --cGCCGcgAcUGAGCGCGG-GUGCGc -3'
miRNA:   3'- cauUGGCaaUuACUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 39175 0.66 0.999998
Target:  5'- cUAGCgUGUUGcUGAcGCGCGACG-ACGa -3'
miRNA:   3'- cAUUG-GCAAUuACU-CGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 75904 0.66 0.999999
Target:  5'- uGUcGgCGUgGAUGGGCACGuugugcucgcgcACGUACGu -3'
miRNA:   3'- -CAuUgGCAaUUACUCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 78833 0.66 0.999999
Target:  5'- cGUAACgGUUAcgGAGCACcagccgaagGugGUGa- -3'
miRNA:   3'- -CAUUGgCAAUuaCUCGUG---------CugCAUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.