Results 41 - 60 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14283 | 5' | -61.4 | NC_003521.1 | + | 100272 | 0.74 | 0.330148 |
Target: 5'- gCCGC-CGCCGcCGCAGCAGCCaCCGc -3' miRNA: 3'- gGGCGaGUGGU-GUGUCGUCGGgGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 133020 | 0.74 | 0.330148 |
Target: 5'- gCCGC-CACCgGCACaguaucAGCAGCCCCCa- -3' miRNA: 3'- gGGCGaGUGG-UGUG------UCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 64208 | 0.76 | 0.265682 |
Target: 5'- aCCUGCUgGCCACGCAGCAGCgCgaggaCGUg -3' miRNA: 3'- -GGGCGAgUGGUGUGUCGUCGgGg----GCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 56668 | 0.77 | 0.242898 |
Target: 5'- uCCCGCUCGCgCACcaggucGCAGUAGCCgCCCa- -3' miRNA: 3'- -GGGCGAGUG-GUG------UGUCGUCGG-GGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 142290 | 0.78 | 0.188552 |
Target: 5'- aCCCGC-CGCCGCuGCAGCGGCCCagCCGc -3' miRNA: 3'- -GGGCGaGUGGUG-UGUCGUCGGG--GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 45480 | 0.72 | 0.446917 |
Target: 5'- aCCCgGCcCACCAcCACGGCAGCCUUCu- -3' miRNA: 3'- -GGG-CGaGUGGU-GUGUCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 126725 | 0.72 | 0.455493 |
Target: 5'- gCCG-UCACCGCACAGCAGCCgUg-- -3' miRNA: 3'- gGGCgAGUGGUGUGUCGUCGGgGgca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 221160 | 0.7 | 0.545586 |
Target: 5'- --gGCUCgGCCcaGCGCAGCAGCCCCa-- -3' miRNA: 3'- gggCGAG-UGG--UGUGUCGUCGGGGgca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 117374 | 0.71 | 0.527023 |
Target: 5'- aCCCGCggUCcCCGCuACGGC-GCCUCCGUc -3' miRNA: 3'- -GGGCG--AGuGGUG-UGUCGuCGGGGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 112436 | 0.71 | 0.527023 |
Target: 5'- gCCCGCUCagGCgGCccaGGCGGCCCUgGUg -3' miRNA: 3'- -GGGCGAG--UGgUGug-UCGUCGGGGgCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 117655 | 0.71 | 0.51783 |
Target: 5'- cCCCGC-CGCCGCcgccaccucaGCAGCAGCaCCaCCa- -3' miRNA: 3'- -GGGCGaGUGGUG----------UGUCGUCG-GG-GGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 74170 | 0.71 | 0.51783 |
Target: 5'- gCCGCUgGCCgacuGCGCcGCGGCgCCCGg -3' miRNA: 3'- gGGCGAgUGG----UGUGuCGUCGgGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 101394 | 0.71 | 0.508701 |
Target: 5'- gCCGCUUgacgGCCACGCAGgAGagCCCGUg -3' miRNA: 3'- gGGCGAG----UGGUGUGUCgUCggGGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 74702 | 0.71 | 0.499641 |
Target: 5'- aCgGCggCGCCGCgGCAGCGGCUCCCu- -3' miRNA: 3'- gGgCGa-GUGGUG-UGUCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 226842 | 0.71 | 0.490654 |
Target: 5'- gCCCGC-CGCCGCGCcgGGCAGgCCCa-- -3' miRNA: 3'- -GGGCGaGUGGUGUG--UCGUCgGGGgca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 155447 | 0.71 | 0.481742 |
Target: 5'- aCCCGCUgGgCGaguCGCAGCAGCCCgUCGa -3' miRNA: 3'- -GGGCGAgUgGU---GUGUCGUCGGG-GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 4448 | 0.71 | 0.473789 |
Target: 5'- gCCCGaggcgaucugaaggCACCGC-CuGCGGCCCCCGa -3' miRNA: 3'- -GGGCga------------GUGGUGuGuCGUCGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 129238 | 0.71 | 0.472909 |
Target: 5'- gCCGCUgGCCACGC-GCGGCaCCUGg -3' miRNA: 3'- gGGCGAgUGGUGUGuCGUCGgGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 115093 | 0.71 | 0.472909 |
Target: 5'- cCCUGCUC-CUGCGCcgucGCcGCCCCCGUc -3' miRNA: 3'- -GGGCGAGuGGUGUGu---CGuCGGGGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 142605 | 0.72 | 0.455493 |
Target: 5'- cCCCGcCUC-CCACGCcGCuGCCCgCCGa -3' miRNA: 3'- -GGGC-GAGuGGUGUGuCGuCGGG-GGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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