miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 135354 0.66 0.770941
Target:  5'- uCCCGCgcgCGCCGucucCGCGGCGGUUaucgCCCGc -3'
miRNA:   3'- -GGGCGa--GUGGU----GUGUCGUCGG----GGGCa -5'
14283 5' -61.4 NC_003521.1 + 68553 0.66 0.788301
Target:  5'- gCCGCcaACUAUcaGCAGCAGCUgCCGg -3'
miRNA:   3'- gGGCGagUGGUG--UGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 141531 0.66 0.788301
Target:  5'- gCCUGCUCugCGCccucuACAGCcagaaccGCCUCUGUc -3'
miRNA:   3'- -GGGCGAGugGUG-----UGUCGu------CGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 235096 0.66 0.770941
Target:  5'- uCUCGCgcggaCACUACcacccccuagcgAUAGaCAGCCCCCGg -3'
miRNA:   3'- -GGGCGa----GUGGUG------------UGUC-GUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 153041 0.66 0.788301
Target:  5'- gCCCGag-ACCgACGaGGCGGCCCCCa- -3'
miRNA:   3'- -GGGCgagUGG-UGUgUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 118915 0.66 0.787444
Target:  5'- cCUCGUcggCGCCGCggcguggGCGGCGGCgUCCCGUc -3'
miRNA:   3'- -GGGCGa--GUGGUG-------UGUCGUCG-GGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 12350 0.66 0.779679
Target:  5'- gCCGCU-ACUAUaACAGCAGCUUCUGg -3'
miRNA:   3'- gGGCGAgUGGUG-UGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 204470 0.66 0.779679
Target:  5'- gCCGC--GCCACGcCAGCccgAGCCCCUa- -3'
miRNA:   3'- gGGCGagUGGUGU-GUCG---UCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 125609 0.66 0.762096
Target:  5'- gUCCGUgUCGCCGCGgAuGCAGUCCuuGg -3'
miRNA:   3'- -GGGCG-AGUGGUGUgU-CGUCGGGggCa -5'
14283 5' -61.4 NC_003521.1 + 166752 0.66 0.762096
Target:  5'- cCUCGCcCGCCAgACAGCGGCgCgUGa -3'
miRNA:   3'- -GGGCGaGUGGUgUGUCGUCGgGgGCa -5'
14283 5' -61.4 NC_003521.1 + 11574 0.66 0.788301
Target:  5'- uUCC-CUCACCGCaaGCAccuccGCGGCCCgCGg -3'
miRNA:   3'- -GGGcGAGUGGUG--UGU-----CGUCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 218463 0.66 0.762096
Target:  5'- gCCGg-CACCACgccgugggcGCAGUGGCCCCgGa -3'
miRNA:   3'- gGGCgaGUGGUG---------UGUCGUCGGGGgCa -5'
14283 5' -61.4 NC_003521.1 + 53374 0.66 0.788301
Target:  5'- uCCCGCUgaCGCgGCGCAccagcuucuGCAGCUCCUu- -3'
miRNA:   3'- -GGGCGA--GUGgUGUGU---------CGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 131313 0.66 0.762096
Target:  5'- aCCGUcggcggcgUCACCugGCcguGCAGCgcuucgCCCCGUg -3'
miRNA:   3'- gGGCG--------AGUGGugUGu--CGUCG------GGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 202960 0.66 0.770941
Target:  5'- aCCGCUCAguCCGCAgGcCAGCCUgUGUa -3'
miRNA:   3'- gGGCGAGU--GGUGUgUcGUCGGGgGCA- -5'
14283 5' -61.4 NC_003521.1 + 186574 0.66 0.770941
Target:  5'- gCCUGCUUgucuCCAgAacggUAGCAGCCgCCCGg -3'
miRNA:   3'- -GGGCGAGu---GGUgU----GUCGUCGG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 140110 0.66 0.805168
Target:  5'- cCCCGcCUCcuccaucagcgGCCGCgGCGGC-GCCUCCGc -3'
miRNA:   3'- -GGGC-GAG-----------UGGUG-UGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 236568 0.66 0.788301
Target:  5'- uCgUGCUCGCCGugugccaucuCACGGCAGCcagCCUCGg -3'
miRNA:   3'- -GgGCGAGUGGU----------GUGUCGUCG---GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 26194 0.66 0.783142
Target:  5'- gCCGCUCGCUGCAgcacagguauccggcCAGacguucggcuucCAGCCCCuCGUc -3'
miRNA:   3'- gGGCGAGUGGUGU---------------GUC------------GUCGGGG-GCA- -5'
14283 5' -61.4 NC_003521.1 + 99614 0.66 0.762096
Target:  5'- aCCUGCagCGCCcggcgGCGCAGCgccacGGCCaCCCGc -3'
miRNA:   3'- -GGGCGa-GUGG-----UGUGUCG-----UCGG-GGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.