miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 8257 1.09 0.001643
Target:  5'- cCCCGCUCACCACACAGCAGCCCCCGUa -3'
miRNA:   3'- -GGGCGAGUGGUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 117226 0.8 0.152337
Target:  5'- aCCCGCUgACgGcCGCGGCGGCUCCCGg -3'
miRNA:   3'- -GGGCGAgUGgU-GUGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 142290 0.78 0.188552
Target:  5'- aCCCGC-CGCCGCuGCAGCGGCCCagCCGc -3'
miRNA:   3'- -GGGCGaGUGGUG-UGUCGUCGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 56668 0.77 0.242898
Target:  5'- uCCCGCUCGCgCACcaggucGCAGUAGCCgCCCa- -3'
miRNA:   3'- -GGGCGAGUG-GUG------UGUCGUCGG-GGGca -5'
14283 5' -61.4 NC_003521.1 + 64208 0.76 0.265682
Target:  5'- aCCUGCUgGCCACGCAGCAGCgCgaggaCGUg -3'
miRNA:   3'- -GGGCGAgUGGUGUGUCGUCGgGg----GCA- -5'
14283 5' -61.4 NC_003521.1 + 183602 0.75 0.296557
Target:  5'- gCCGCUCGCCuCugAGCuacGCCUCCGa -3'
miRNA:   3'- gGGCGAGUGGuGugUCGu--CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 142409 0.75 0.309666
Target:  5'- cCCCGC-CACCACcggacaauaacaGCAGCAGCgCCgCCGa -3'
miRNA:   3'- -GGGCGaGUGGUG------------UGUCGUCG-GG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 133020 0.74 0.330148
Target:  5'- gCCGC-CACCgGCACaguaucAGCAGCCCCCa- -3'
miRNA:   3'- gGGCGaGUGG-UGUG------UCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 100272 0.74 0.330148
Target:  5'- gCCGC-CGCCGcCGCAGCAGCCaCCGc -3'
miRNA:   3'- gGGCGaGUGGU-GUGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 234377 0.74 0.351612
Target:  5'- aUCCGCUCcucCCGugcuguuguCGCAGCGGCCCCCc- -3'
miRNA:   3'- -GGGCGAGu--GGU---------GUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 233165 0.74 0.366462
Target:  5'- aCCGCUguCCGCGCcgccguGGCGGCCgCCGUu -3'
miRNA:   3'- gGGCGAguGGUGUG------UCGUCGGgGGCA- -5'
14283 5' -61.4 NC_003521.1 + 83937 0.73 0.374048
Target:  5'- cCCCGUgcCAUCGgGCAGCGGCCgCCGg -3'
miRNA:   3'- -GGGCGa-GUGGUgUGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 170683 0.73 0.387185
Target:  5'- gCCgCGCUCGCCGCAgcucgaggcccugaUAGCGGCCCuUCGg -3'
miRNA:   3'- -GG-GCGAGUGGUGU--------------GUCGUCGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 206887 0.73 0.389534
Target:  5'- gCCGCgcaCGCCGCACAGCAGCaCCauGg -3'
miRNA:   3'- gGGCGa--GUGGUGUGUCGUCG-GGggCa -5'
14283 5' -61.4 NC_003521.1 + 16396 0.73 0.389534
Target:  5'- aCCGCUCgcccACCACGCAGC-GCCUggCCGg -3'
miRNA:   3'- gGGCGAG----UGGUGUGUCGuCGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 181564 0.73 0.405435
Target:  5'- gCgCGCUuacgaaCGCC-CGCAGCAGCCCCaCGUu -3'
miRNA:   3'- -GgGCGA------GUGGuGUGUCGUCGGGG-GCA- -5'
14283 5' -61.4 NC_003521.1 + 103512 0.73 0.413537
Target:  5'- aCUCGgggUCGCCGCGCAGCAGCCgcgccaCCCGc -3'
miRNA:   3'- -GGGCg--AGUGGUGUGUCGUCGG------GGGCa -5'
14283 5' -61.4 NC_003521.1 + 42030 0.73 0.413537
Target:  5'- gCCGCcggCACCACGCAGCuGCUaCCCa- -3'
miRNA:   3'- gGGCGa--GUGGUGUGUCGuCGG-GGGca -5'
14283 5' -61.4 NC_003521.1 + 160329 0.72 0.421738
Target:  5'- gCCGUggGCgGCGCGGUGGCCUCCGUc -3'
miRNA:   3'- gGGCGagUGgUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 136927 0.72 0.421738
Target:  5'- uCCCGUUaccugACCGCGCGGCAGCCCa--- -3'
miRNA:   3'- -GGGCGAg----UGGUGUGUCGUCGGGggca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.