miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 4448 0.71 0.473789
Target:  5'- gCCCGaggcgaucugaaggCACCGC-CuGCGGCCCCCGa -3'
miRNA:   3'- -GGGCga------------GUGGUGuGuCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 4675 0.66 0.805168
Target:  5'- uCCCGCcggCGacgUCGCGCGGUccCCCCCGUc -3'
miRNA:   3'- -GGGCGa--GU---GGUGUGUCGucGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 6676 0.68 0.678841
Target:  5'- uCCCGCUCguGCUGCAgGGCcuGCgCCCGc -3'
miRNA:   3'- -GGGCGAG--UGGUGUgUCGu-CGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 8257 1.09 0.001643
Target:  5'- cCCCGCUCACCACACAGCAGCCCCCGUa -3'
miRNA:   3'- -GGGCGAGUGGUGUGUCGUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 11574 0.66 0.788301
Target:  5'- uUCC-CUCACCGCaaGCAccuccGCGGCCCgCGg -3'
miRNA:   3'- -GGGcGAGUGGUG--UGU-----CGUCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 12093 0.67 0.745016
Target:  5'- gCUGCUCACCACGCAGCccgacaacaugaucuGCgaCCUGc -3'
miRNA:   3'- gGGCGAGUGGUGUGUCGu--------------CGg-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 12350 0.66 0.779679
Target:  5'- gCCGCU-ACUAUaACAGCAGCUUCUGg -3'
miRNA:   3'- gGGCGAgUGGUG-UGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 13929 0.71 0.472909
Target:  5'- gCCgCGCUgGCCGC-CGuGguGCCCCCGc -3'
miRNA:   3'- -GG-GCGAgUGGUGuGU-CguCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 16396 0.73 0.389534
Target:  5'- aCCGCUCgcccACCACGCAGC-GCCUggCCGg -3'
miRNA:   3'- gGGCGAG----UGGUGUGUCGuCGGG--GGCa -5'
14283 5' -61.4 NC_003521.1 + 17358 0.66 0.788301
Target:  5'- gCCGUgaCGCCgGCGCGGCGGCCCagacuCGa -3'
miRNA:   3'- gGGCGa-GUGG-UGUGUCGUCGGGg----GCa -5'
14283 5' -61.4 NC_003521.1 + 17498 0.69 0.621479
Target:  5'- -gCGC-CGCCGguCACGGCGGUUCCCGg -3'
miRNA:   3'- ggGCGaGUGGU--GUGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 19015 0.66 0.796799
Target:  5'- gCCCGCccCGCCgACGgAGCccauGCCCgCCGa -3'
miRNA:   3'- -GGGCGa-GUGG-UGUgUCGu---CGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 22201 0.72 0.455493
Target:  5'- gCCGCUuacCGCCGCGCgcuGGCGGCCgaaCCGUa -3'
miRNA:   3'- gGGCGA---GUGGUGUG---UCGUCGGg--GGCA- -5'
14283 5' -61.4 NC_003521.1 + 23431 0.68 0.65978
Target:  5'- gCCGCUCAgCCugGCGGU-GCCCaCgGUg -3'
miRNA:   3'- gGGCGAGU-GGugUGUCGuCGGG-GgCA- -5'
14283 5' -61.4 NC_003521.1 + 24546 0.69 0.618606
Target:  5'- gUCCGCUCcacgagcuggcgcuACUACuCGGCGGCCUCCu- -3'
miRNA:   3'- -GGGCGAG--------------UGGUGuGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 25180 0.66 0.805168
Target:  5'- uCCCGCcgCgACCAUGCGG-AGCCCCg-- -3'
miRNA:   3'- -GGGCGa-G-UGGUGUGUCgUCGGGGgca -5'
14283 5' -61.4 NC_003521.1 + 26008 0.69 0.63106
Target:  5'- aCCGCcgUCGCCGCGCc-CGGCgCCCGa -3'
miRNA:   3'- gGGCG--AGUGGUGUGucGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 26194 0.66 0.783142
Target:  5'- gCCGCUCGCUGCAgcacagguauccggcCAGacguucggcuucCAGCCCCuCGUc -3'
miRNA:   3'- gGGCGAGUGGUGU---------------GUC------------GUCGGGG-GCA- -5'
14283 5' -61.4 NC_003521.1 + 26256 0.67 0.753148
Target:  5'- aCCC-CUCGCCccuGCugcuCAGCuGCaCCCCGg -3'
miRNA:   3'- -GGGcGAGUGG---UGu---GUCGuCG-GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 27953 0.67 0.725776
Target:  5'- gCCCGCgUCcacgacgacgACCAUACcGCuGCCCCCc- -3'
miRNA:   3'- -GGGCG-AG----------UGGUGUGuCGuCGGGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.