miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 239661 0.69 0.621479
Target:  5'- uCCCGUagGCgGCGCcGUGGCUCCCGg -3'
miRNA:   3'- -GGGCGagUGgUGUGuCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 237645 0.68 0.669324
Target:  5'- gCCCuugUCGCCACGCAGCGuGCCauCCUGUu -3'
miRNA:   3'- -GGGcg-AGUGGUGUGUCGU-CGG--GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 236568 0.66 0.788301
Target:  5'- uCgUGCUCGCCGugugccaucuCACGGCAGCcagCCUCGg -3'
miRNA:   3'- -GgGCGAGUGGU----------GUGUCGUCG---GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 236461 0.66 0.805168
Target:  5'- aCCUGCUCgGCCGCA-AGCGGCgaaCCGg -3'
miRNA:   3'- -GGGCGAG-UGGUGUgUCGUCGgg-GGCa -5'
14283 5' -61.4 NC_003521.1 + 235140 0.67 0.744107
Target:  5'- gCCCGUUC-CC-CGCGGacgGGCgCCCGUg -3'
miRNA:   3'- -GGGCGAGuGGuGUGUCg--UCGgGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 235096 0.66 0.770941
Target:  5'- uCUCGCgcggaCACUACcacccccuagcgAUAGaCAGCCCCCGg -3'
miRNA:   3'- -GGGCGa----GUGGUG------------UGUC-GUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 234427 0.66 0.787444
Target:  5'- aCCCG-UCGCCGcCGCGGUAGCugcggcgCCCCu- -3'
miRNA:   3'- -GGGCgAGUGGU-GUGUCGUCG-------GGGGca -5'
14283 5' -61.4 NC_003521.1 + 234377 0.74 0.351612
Target:  5'- aUCCGCUCcucCCGugcuguuguCGCAGCGGCCCCCc- -3'
miRNA:   3'- -GGGCGAGu--GGU---------GUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 233165 0.74 0.366462
Target:  5'- aCCGCUguCCGCGCcgccguGGCGGCCgCCGUu -3'
miRNA:   3'- gGGCGAguGGUGUG------UCGUCGGgGGCA- -5'
14283 5' -61.4 NC_003521.1 + 229240 0.67 0.744107
Target:  5'- aCCCGCggGCCGCGgAGguGCUUgCGg -3'
miRNA:   3'- -GGGCGagUGGUGUgUCguCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 227452 0.67 0.707162
Target:  5'- uCCCGUUCACgUAgUACA--GGCCCCCGUc -3'
miRNA:   3'- -GGGCGAGUG-GU-GUGUcgUCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 227096 0.68 0.688325
Target:  5'- gUCCGa--GCCACugAGCGGUUCCCa- -3'
miRNA:   3'- -GGGCgagUGGUGugUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 226889 0.67 0.756739
Target:  5'- gCUGCgggggCACCACgGCGGCcagcgcggccuccgcGGCCCCCu- -3'
miRNA:   3'- gGGCGa----GUGGUG-UGUCG---------------UCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 226842 0.71 0.490654
Target:  5'- gCCCGC-CGCCGCGCcgGGCAGgCCCa-- -3'
miRNA:   3'- -GGGCGaGUGGUGUG--UCGUCgGGGgca -5'
14283 5' -61.4 NC_003521.1 + 225602 0.7 0.554947
Target:  5'- uCgCGCUCgGCCGC-CuGCAGCCCCaCGa -3'
miRNA:   3'- -GgGCGAG-UGGUGuGuCGUCGGGG-GCa -5'
14283 5' -61.4 NC_003521.1 + 224252 0.68 0.682639
Target:  5'- cCCCGgUCGCCuCGCAggcGCAGCUuucucgcuuaaaaagCCCGUg -3'
miRNA:   3'- -GGGCgAGUGGuGUGU---CGUCGG---------------GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 223803 0.67 0.707162
Target:  5'- gUCGCUCcucuucCCGCuguuGCAGCAGCUCCUGc -3'
miRNA:   3'- gGGCGAGu-----GGUG----UGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 223058 0.67 0.7165
Target:  5'- aCCGUcCGCCGC-CGGCGGUacggccaguuCCCCGg -3'
miRNA:   3'- gGGCGaGUGGUGuGUCGUCG----------GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 222092 0.69 0.59948
Target:  5'- aCCGC-CGCCACgaucgccgccgccaGCGGCAGCCacagCCGg -3'
miRNA:   3'- gGGCGaGUGGUG--------------UGUCGUCGGg---GGCa -5'
14283 5' -61.4 NC_003521.1 + 222047 0.66 0.796799
Target:  5'- aUCgGCggggggCACCAgccguCGCAGCAGCgaCCCGUc -3'
miRNA:   3'- -GGgCGa-----GUGGU-----GUGUCGUCGg-GGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.