miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 29373 0.66 0.779679
Target:  5'- aCCCGCg-GCCGCGguacccUGGUuGCCCCUGUg -3'
miRNA:   3'- -GGGCGagUGGUGU------GUCGuCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 30478 0.68 0.677891
Target:  5'- aCCUGCcccuccgUCACCAC-CAGCAGUUUCCa- -3'
miRNA:   3'- -GGGCG-------AGUGGUGuGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 30969 0.68 0.669324
Target:  5'- -gCGCUCGgCACGCAGCAGCagCUgCGg -3'
miRNA:   3'- ggGCGAGUgGUGUGUCGUCG--GGgGCa -5'
14283 5' -61.4 NC_003521.1 + 34696 0.72 0.43843
Target:  5'- gCCCGUUCucagcAUCGCGCAGCAGCUgaCCGg -3'
miRNA:   3'- -GGGCGAG-----UGGUGUGUCGUCGGg-GGCa -5'
14283 5' -61.4 NC_003521.1 + 35464 0.68 0.697767
Target:  5'- gCCGCgcaggucgugCACgGCGCAGCuGCCgCCGc -3'
miRNA:   3'- gGGCGa---------GUGgUGUGUCGuCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 37479 0.67 0.753148
Target:  5'- aCCGUggUGCCGCAgGGCA-CCCCCa- -3'
miRNA:   3'- gGGCGa-GUGGUGUgUCGUcGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 39434 0.69 0.621479
Target:  5'- uCCCGUagGCgGCGCcGUGGCUCCCGg -3'
miRNA:   3'- -GGGCGagUGgUGUGuCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 42030 0.73 0.413537
Target:  5'- gCCGCcggCACCACGCAGCuGCUaCCCa- -3'
miRNA:   3'- gGGCGa--GUGGUGUGUCGuCGG-GGGca -5'
14283 5' -61.4 NC_003521.1 + 42406 0.66 0.788301
Target:  5'- gCCGCcaccgUCACCACaACGGaAGCCaCCGUg -3'
miRNA:   3'- gGGCG-----AGUGGUG-UGUCgUCGGgGGCA- -5'
14283 5' -61.4 NC_003521.1 + 43020 0.66 0.805168
Target:  5'- aUCGUaCACCACACAGCAGUacaCGg -3'
miRNA:   3'- gGGCGaGUGGUGUGUCGUCGgggGCa -5'
14283 5' -61.4 NC_003521.1 + 44006 0.68 0.697767
Target:  5'- gCCUGCUCAaC-CACGGCcuGCCCUCGc -3'
miRNA:   3'- -GGGCGAGUgGuGUGUCGu-CGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 44044 0.7 0.583288
Target:  5'- uCCCGUUUACCGCGCccGCGGUCgCgCCGg -3'
miRNA:   3'- -GGGCGAGUGGUGUGu-CGUCGG-G-GGCa -5'
14283 5' -61.4 NC_003521.1 + 45480 0.72 0.446917
Target:  5'- aCCCgGCcCACCAcCACGGCAGCCUUCu- -3'
miRNA:   3'- -GGG-CGaGUGGU-GUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 53210 0.67 0.725776
Target:  5'- gCCCgGCUCGcCCugGCAgGCcguGCCCaCCGg -3'
miRNA:   3'- -GGG-CGAGU-GGugUGU-CGu--CGGG-GGCa -5'
14283 5' -61.4 NC_003521.1 + 53227 0.68 0.697767
Target:  5'- gUCCGCgggcgaagCgACCGC-CGGCgaAGCCCCCGc -3'
miRNA:   3'- -GGGCGa-------G-UGGUGuGUCG--UCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 53374 0.66 0.788301
Target:  5'- uCCCGCUgaCGCgGCGCAccagcuucuGCAGCUCCUu- -3'
miRNA:   3'- -GGGCGA--GUGgUGUGU---------CGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 53902 0.69 0.63106
Target:  5'- gCCGCcccCGCCAC-CGGC-GCCCCCc- -3'
miRNA:   3'- gGGCGa--GUGGUGuGUCGuCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 54042 0.67 0.707162
Target:  5'- cCCCGCcgcCGCCAcCACcGCcGCCUCCGc -3'
miRNA:   3'- -GGGCGa--GUGGU-GUGuCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 54211 0.67 0.7165
Target:  5'- aCCGC-CGCCGC-C-GUAGCCCuuGUc -3'
miRNA:   3'- gGGCGaGUGGUGuGuCGUCGGGggCA- -5'
14283 5' -61.4 NC_003521.1 + 54289 0.66 0.788301
Target:  5'- cCCUGC-CuCC-CACGG-AGCCCCCGc -3'
miRNA:   3'- -GGGCGaGuGGuGUGUCgUCGGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.