Results 21 - 40 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14283 | 5' | -61.4 | NC_003521.1 | + | 90729 | 0.72 | 0.430036 |
Target: 5'- aCCCGCUCuguucCCGCAUAGCuGaUCCCGUa -3' miRNA: 3'- -GGGCGAGu----GGUGUGUCGuCgGGGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 120048 | 0.72 | 0.430036 |
Target: 5'- gCUCGCcCACCGCGCAGU-GCCCCUu- -3' miRNA: 3'- -GGGCGaGUGGUGUGUCGuCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 187320 | 0.72 | 0.43843 |
Target: 5'- gCCGCUgcgaCGCCGCAgCAGCGGCCUCgaCGUg -3' miRNA: 3'- gGGCGA----GUGGUGU-GUCGUCGGGG--GCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 34696 | 0.72 | 0.43843 |
Target: 5'- gCCCGUUCucagcAUCGCGCAGCAGCUgaCCGg -3' miRNA: 3'- -GGGCGAG-----UGGUGUGUCGUCGGg-GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 137155 | 0.72 | 0.43843 |
Target: 5'- gCCCGCcaUgGCCGCggccGCAGCGGCCgCCGc -3' miRNA: 3'- -GGGCG--AgUGGUG----UGUCGUCGGgGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 45480 | 0.72 | 0.446917 |
Target: 5'- aCCCgGCcCACCAcCACGGCAGCCUUCu- -3' miRNA: 3'- -GGG-CGaGUGGU-GUGUCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 197017 | 0.72 | 0.455493 |
Target: 5'- aCCCgGCUgCugCgACAUGGCGGCCCCCc- -3' miRNA: 3'- -GGG-CGA-GugG-UGUGUCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 130731 | 0.72 | 0.455493 |
Target: 5'- gCCCGCUUACCgcaGCGCGGUagagcuGGCCUUCGg -3' miRNA: 3'- -GGGCGAGUGG---UGUGUCG------UCGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 22201 | 0.72 | 0.455493 |
Target: 5'- gCCGCUuacCGCCGCGCgcuGGCGGCCgaaCCGUa -3' miRNA: 3'- gGGCGA---GUGGUGUG---UCGUCGGg--GGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 126725 | 0.72 | 0.455493 |
Target: 5'- gCCG-UCACCGCACAGCAGCCgUg-- -3' miRNA: 3'- gGGCgAGUGGUGUGUCGUCGGgGgca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 142605 | 0.72 | 0.455493 |
Target: 5'- cCCCGcCUC-CCACGCcGCuGCCCgCCGa -3' miRNA: 3'- -GGGC-GAGuGGUGUGuCGuCGGG-GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 115093 | 0.71 | 0.472909 |
Target: 5'- cCCUGCUC-CUGCGCcgucGCcGCCCCCGUc -3' miRNA: 3'- -GGGCGAGuGGUGUGu---CGuCGGGGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 129238 | 0.71 | 0.472909 |
Target: 5'- gCCGCUgGCCACGC-GCGGCaCCUGg -3' miRNA: 3'- gGGCGAgUGGUGUGuCGUCGgGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 13929 | 0.71 | 0.472909 |
Target: 5'- gCCgCGCUgGCCGC-CGuGguGCCCCCGc -3' miRNA: 3'- -GG-GCGAgUGGUGuGU-CguCGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 90199 | 0.71 | 0.472909 |
Target: 5'- cCCCGC---CUGCGCAGCAGCCgCCGc -3' miRNA: 3'- -GGGCGaguGGUGUGUCGUCGGgGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 119906 | 0.71 | 0.472909 |
Target: 5'- gCCGCgggcaGCCGCaaacgcaaGCAGCcGCCCCCGa -3' miRNA: 3'- gGGCGag---UGGUG--------UGUCGuCGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 4448 | 0.71 | 0.473789 |
Target: 5'- gCCCGaggcgaucugaaggCACCGC-CuGCGGCCCCCGa -3' miRNA: 3'- -GGGCga------------GUGGUGuGuCGUCGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 155447 | 0.71 | 0.481742 |
Target: 5'- aCCCGCUgGgCGaguCGCAGCAGCCCgUCGa -3' miRNA: 3'- -GGGCGAgUgGU---GUGUCGUCGGG-GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 226842 | 0.71 | 0.490654 |
Target: 5'- gCCCGC-CGCCGCGCcgGGCAGgCCCa-- -3' miRNA: 3'- -GGGCGaGUGGUGUG--UCGUCgGGGgca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 74584 | 0.71 | 0.490654 |
Target: 5'- gCCCGCUCGCCGgGCGGCAucacGCUCUUc- -3' miRNA: 3'- -GGGCGAGUGGUgUGUCGU----CGGGGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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