miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 138450 0.66 0.791716
Target:  5'- cCCCGCgcgugCAUCGCcgGCGGCGccacaucugccaccuGCCgCCCGUc -3'
miRNA:   3'- -GGGCGa----GUGGUG--UGUCGU---------------CGG-GGGCA- -5'
14283 5' -61.4 NC_003521.1 + 117425 0.66 0.789157
Target:  5'- gCCCGCguauccUCACCAUcccuccccguauucuCAcCAGCCCCCGc -3'
miRNA:   3'- -GGGCG------AGUGGUGu--------------GUcGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 80988 0.66 0.788301
Target:  5'- -aCGCUCGcgccuCCGCGCAGC-GCCUCaCGg -3'
miRNA:   3'- ggGCGAGU-----GGUGUGUCGuCGGGG-GCa -5'
14283 5' -61.4 NC_003521.1 + 54289 0.66 0.788301
Target:  5'- cCCUGC-CuCC-CACGG-AGCCCCCGc -3'
miRNA:   3'- -GGGCGaGuGGuGUGUCgUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 236568 0.66 0.788301
Target:  5'- uCgUGCUCGCCGugugccaucuCACGGCAGCcagCCUCGg -3'
miRNA:   3'- -GgGCGAGUGGU----------GUGUCGUCG---GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 102103 0.66 0.788301
Target:  5'- cUCCGgacgCACCAC-CAGCcaGGCgCCCGUg -3'
miRNA:   3'- -GGGCga--GUGGUGuGUCG--UCGgGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 215265 0.66 0.788301
Target:  5'- cCCCGCggcCGCCuGCACAaCAGCgUCCGc -3'
miRNA:   3'- -GGGCGa--GUGG-UGUGUcGUCGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 42406 0.66 0.788301
Target:  5'- gCCGCcaccgUCACCACaACGGaAGCCaCCGUg -3'
miRNA:   3'- gGGCG-----AGUGGUG-UGUCgUCGGgGGCA- -5'
14283 5' -61.4 NC_003521.1 + 170445 0.66 0.788301
Target:  5'- gCCCGCUaccucuacCGCCGC-CuGCGGCucuaCCCCGc -3'
miRNA:   3'- -GGGCGA--------GUGGUGuGuCGUCG----GGGGCa -5'
14283 5' -61.4 NC_003521.1 + 17358 0.66 0.788301
Target:  5'- gCCGUgaCGCCgGCGCGGCGGCCCagacuCGa -3'
miRNA:   3'- gGGCGa-GUGG-UGUGUCGUCGGGg----GCa -5'
14283 5' -61.4 NC_003521.1 + 125172 0.66 0.788301
Target:  5'- aCCCGCcacuggggCGCCgACAC-GCacgAGCCCCUGa -3'
miRNA:   3'- -GGGCGa-------GUGG-UGUGuCG---UCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 11574 0.66 0.788301
Target:  5'- uUCC-CUCACCGCaaGCAccuccGCGGCCCgCGg -3'
miRNA:   3'- -GGGcGAGUGGUG--UGU-----CGUCGGGgGCa -5'
14283 5' -61.4 NC_003521.1 + 139601 0.66 0.788301
Target:  5'- gCCGCggCACCaggaACACGGUGGCCUUCu- -3'
miRNA:   3'- gGGCGa-GUGG----UGUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 68553 0.66 0.788301
Target:  5'- gCCGCcaACUAUcaGCAGCAGCUgCCGg -3'
miRNA:   3'- gGGCGagUGGUG--UGUCGUCGGgGGCa -5'
14283 5' -61.4 NC_003521.1 + 141531 0.66 0.788301
Target:  5'- gCCUGCUCugCGCccucuACAGCcagaaccGCCUCUGUc -3'
miRNA:   3'- -GGGCGAGugGUG-----UGUCGu------CGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 153041 0.66 0.788301
Target:  5'- gCCCGag-ACCgACGaGGCGGCCCCCa- -3'
miRNA:   3'- -GGGCgagUGG-UGUgUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 141103 0.66 0.788301
Target:  5'- gCUGCUCuacugcggcCCGCGCAGCuucuGCgCCCGc -3'
miRNA:   3'- gGGCGAGu--------GGUGUGUCGu---CGgGGGCa -5'
14283 5' -61.4 NC_003521.1 + 53374 0.66 0.788301
Target:  5'- uCCCGCUgaCGCgGCGCAccagcuucuGCAGCUCCUu- -3'
miRNA:   3'- -GGGCGA--GUGgUGUGU---------CGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 234427 0.66 0.787444
Target:  5'- aCCCG-UCGCCGcCGCGGUAGCugcggcgCCCCu- -3'
miRNA:   3'- -GGGCgAGUGGU-GUGUCGUCG-------GGGGca -5'
14283 5' -61.4 NC_003521.1 + 205771 0.66 0.787444
Target:  5'- aCCUGUgugguggCGCCGCACGGCAugagcguGCCCaaCCGc -3'
miRNA:   3'- -GGGCGa------GUGGUGUGUCGU-------CGGG--GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.