miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 5' -61.4 NC_003521.1 + 234427 0.66 0.787444
Target:  5'- aCCCG-UCGCCGcCGCGGUAGCugcggcgCCCCu- -3'
miRNA:   3'- -GGGCgAGUGGU-GUGUCGUCG-------GGGGca -5'
14283 5' -61.4 NC_003521.1 + 193265 0.66 0.785727
Target:  5'- gCCCGCUCGCCgucuuccccgcucgACAUGGaCGaCCUCCGg -3'
miRNA:   3'- -GGGCGAGUGG--------------UGUGUC-GUcGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 26194 0.66 0.783142
Target:  5'- gCCGCUCGCUGCAgcacagguauccggcCAGacguucggcuucCAGCCCCuCGUc -3'
miRNA:   3'- gGGCGAGUGGUGU---------------GUC------------GUCGGGG-GCA- -5'
14283 5' -61.4 NC_003521.1 + 106391 0.66 0.779679
Target:  5'- gCCCGacaccaACCGCAucCAGCAGCCCUUc- -3'
miRNA:   3'- -GGGCgag---UGGUGU--GUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 29373 0.66 0.779679
Target:  5'- aCCCGCg-GCCGCGguacccUGGUuGCCCCUGUg -3'
miRNA:   3'- -GGGCGagUGGUGU------GUCGuCGGGGGCA- -5'
14283 5' -61.4 NC_003521.1 + 135601 0.66 0.779679
Target:  5'- gCCCGCUuuuucuugaCGCCGCGCAGCucgcgGGCggaUCCCa- -3'
miRNA:   3'- -GGGCGA---------GUGGUGUGUCG-----UCG---GGGGca -5'
14283 5' -61.4 NC_003521.1 + 128042 0.66 0.779679
Target:  5'- gCCCGUagGCggccagcaggCACAUGGCGGCCUCCa- -3'
miRNA:   3'- -GGGCGagUG----------GUGUGUCGUCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 166027 0.66 0.779679
Target:  5'- gUCCGCgucUCGCCGCuACcGCuGCCgCCGUc -3'
miRNA:   3'- -GGGCG---AGUGGUG-UGuCGuCGGgGGCA- -5'
14283 5' -61.4 NC_003521.1 + 183244 0.66 0.779679
Target:  5'- --gGUUCGCCGC-CGGC-GCCCUCGa -3'
miRNA:   3'- gggCGAGUGGUGuGUCGuCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 140365 0.66 0.779679
Target:  5'- gCCG-UCACCACucuucuuCGGCGGCCcugcuCCCGa -3'
miRNA:   3'- gGGCgAGUGGUGu------GUCGUCGG-----GGGCa -5'
14283 5' -61.4 NC_003521.1 + 207023 0.66 0.779679
Target:  5'- gCCGCUCucgucacucuACCuGCGCgGGCAGCCCaaGUu -3'
miRNA:   3'- gGGCGAG----------UGG-UGUG-UCGUCGGGggCA- -5'
14283 5' -61.4 NC_003521.1 + 204470 0.66 0.779679
Target:  5'- gCCGC--GCCACGcCAGCccgAGCCCCUa- -3'
miRNA:   3'- gGGCGagUGGUGU-GUCG---UCGGGGGca -5'
14283 5' -61.4 NC_003521.1 + 12350 0.66 0.779679
Target:  5'- gCCGCU-ACUAUaACAGCAGCUUCUGg -3'
miRNA:   3'- gGGCGAgUGGUG-UGUCGUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 152346 0.66 0.770941
Target:  5'- aCCCGCcCACCcucuucaacuCGCuGCAGCCCgacgCCGa -3'
miRNA:   3'- -GGGCGaGUGGu---------GUGuCGUCGGG----GGCa -5'
14283 5' -61.4 NC_003521.1 + 135354 0.66 0.770941
Target:  5'- uCCCGCgcgCGCCGucucCGCGGCGGUUaucgCCCGc -3'
miRNA:   3'- -GGGCGa--GUGGU----GUGUCGUCGG----GGGCa -5'
14283 5' -61.4 NC_003521.1 + 186574 0.66 0.770941
Target:  5'- gCCUGCUUgucuCCAgAacggUAGCAGCCgCCCGg -3'
miRNA:   3'- -GGGCGAGu---GGUgU----GUCGUCGG-GGGCa -5'
14283 5' -61.4 NC_003521.1 + 235096 0.66 0.770941
Target:  5'- uCUCGCgcggaCACUACcacccccuagcgAUAGaCAGCCCCCGg -3'
miRNA:   3'- -GGGCGa----GUGGUG------------UGUC-GUCGGGGGCa -5'
14283 5' -61.4 NC_003521.1 + 212948 0.66 0.770941
Target:  5'- gCCCGC-CuCCAUGCGGUcgaGGUCCuCCGUg -3'
miRNA:   3'- -GGGCGaGuGGUGUGUCG---UCGGG-GGCA- -5'
14283 5' -61.4 NC_003521.1 + 202960 0.66 0.770941
Target:  5'- aCCGCUCAguCCGCAgGcCAGCCUgUGUa -3'
miRNA:   3'- gGGCGAGU--GGUGUgUcGUCGGGgGCA- -5'
14283 5' -61.4 NC_003521.1 + 218463 0.66 0.762096
Target:  5'- gCCGg-CACCACgccgugggcGCAGUGGCCCCgGa -3'
miRNA:   3'- gGGCgaGUGGUG---------UGUCGUCGGGGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.