Results 1 - 20 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14283 | 5' | -61.4 | NC_003521.1 | + | 8257 | 1.09 | 0.001643 |
Target: 5'- cCCCGCUCACCACACAGCAGCCCCCGUa -3' miRNA: 3'- -GGGCGAGUGGUGUGUCGUCGGGGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 117226 | 0.8 | 0.152337 |
Target: 5'- aCCCGCUgACgGcCGCGGCGGCUCCCGg -3' miRNA: 3'- -GGGCGAgUGgU-GUGUCGUCGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 142290 | 0.78 | 0.188552 |
Target: 5'- aCCCGC-CGCCGCuGCAGCGGCCCagCCGc -3' miRNA: 3'- -GGGCGaGUGGUG-UGUCGUCGGG--GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 56668 | 0.77 | 0.242898 |
Target: 5'- uCCCGCUCGCgCACcaggucGCAGUAGCCgCCCa- -3' miRNA: 3'- -GGGCGAGUG-GUG------UGUCGUCGG-GGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 64208 | 0.76 | 0.265682 |
Target: 5'- aCCUGCUgGCCACGCAGCAGCgCgaggaCGUg -3' miRNA: 3'- -GGGCGAgUGGUGUGUCGUCGgGg----GCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 183602 | 0.75 | 0.296557 |
Target: 5'- gCCGCUCGCCuCugAGCuacGCCUCCGa -3' miRNA: 3'- gGGCGAGUGGuGugUCGu--CGGGGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 142409 | 0.75 | 0.309666 |
Target: 5'- cCCCGC-CACCACcggacaauaacaGCAGCAGCgCCgCCGa -3' miRNA: 3'- -GGGCGaGUGGUG------------UGUCGUCG-GG-GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 233165 | 0.74 | 0.366462 |
Target: 5'- aCCGCUguCCGCGCcgccguGGCGGCCgCCGUu -3' miRNA: 3'- gGGCGAguGGUGUG------UCGUCGGgGGCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 234377 | 0.74 | 0.351612 |
Target: 5'- aUCCGCUCcucCCGugcuguuguCGCAGCGGCCCCCc- -3' miRNA: 3'- -GGGCGAGu--GGU---------GUGUCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 100272 | 0.74 | 0.330148 |
Target: 5'- gCCGC-CGCCGcCGCAGCAGCCaCCGc -3' miRNA: 3'- gGGCGaGUGGU-GUGUCGUCGGgGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 133020 | 0.74 | 0.330148 |
Target: 5'- gCCGC-CACCgGCACaguaucAGCAGCCCCCa- -3' miRNA: 3'- gGGCGaGUGG-UGUG------UCGUCGGGGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 103512 | 0.73 | 0.413537 |
Target: 5'- aCUCGgggUCGCCGCGCAGCAGCCgcgccaCCCGc -3' miRNA: 3'- -GGGCg--AGUGGUGUGUCGUCGG------GGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 181564 | 0.73 | 0.405435 |
Target: 5'- gCgCGCUuacgaaCGCC-CGCAGCAGCCCCaCGUu -3' miRNA: 3'- -GgGCGA------GUGGuGUGUCGUCGGGG-GCA- -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 16396 | 0.73 | 0.389534 |
Target: 5'- aCCGCUCgcccACCACGCAGC-GCCUggCCGg -3' miRNA: 3'- gGGCGAG----UGGUGUGUCGuCGGG--GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 42030 | 0.73 | 0.413537 |
Target: 5'- gCCGCcggCACCACGCAGCuGCUaCCCa- -3' miRNA: 3'- gGGCGa--GUGGUGUGUCGuCGG-GGGca -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 206887 | 0.73 | 0.389534 |
Target: 5'- gCCGCgcaCGCCGCACAGCAGCaCCauGg -3' miRNA: 3'- gGGCGa--GUGGUGUGUCGUCG-GGggCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 83937 | 0.73 | 0.374048 |
Target: 5'- cCCCGUgcCAUCGgGCAGCGGCCgCCGg -3' miRNA: 3'- -GGGCGa-GUGGUgUGUCGUCGGgGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 170683 | 0.73 | 0.387185 |
Target: 5'- gCCgCGCUCGCCGCAgcucgaggcccugaUAGCGGCCCuUCGg -3' miRNA: 3'- -GG-GCGAGUGGUGU--------------GUCGUCGGG-GGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 137155 | 0.72 | 0.43843 |
Target: 5'- gCCCGCcaUgGCCGCggccGCAGCGGCCgCCGc -3' miRNA: 3'- -GGGCG--AgUGGUG----UGUCGUCGGgGGCa -5' |
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14283 | 5' | -61.4 | NC_003521.1 | + | 45480 | 0.72 | 0.446917 |
Target: 5'- aCCCgGCcCACCAcCACGGCAGCCUUCu- -3' miRNA: 3'- -GGG-CGaGUGGU-GUGUCGUCGGGGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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