Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14288 | 5' | -60.4 | NC_003521.1 | + | 187823 | 0.66 | 0.813732 |
Target: 5'- uCGUGGcUGUugCGCAGGGCGUuGcGGAc -3' miRNA: 3'- -GCGUCaGCGugGUGUCCCGCA-C-CCUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 105604 | 0.66 | 0.80538 |
Target: 5'- gCGCAGccgcucaggCGCugCAgCAGGGCGUGcucGGGc -3' miRNA: 3'- -GCGUCa--------GCGugGU-GUCCCGCAC---CCUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 162336 | 0.66 | 0.829982 |
Target: 5'- cCGCAGgcgGCgACUGC-GGGCGUGGGc- -3' miRNA: 3'- -GCGUCag-CG-UGGUGuCCCGCACCCua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 195840 | 0.66 | 0.829982 |
Target: 5'- aGCgAGaucUCGCGCgGCAGGGUucgGGGAUc -3' miRNA: 3'- gCG-UC---AGCGUGgUGUCCCGca-CCCUA- -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 113460 | 0.66 | 0.821935 |
Target: 5'- aCGCAccugccgCGCACCACggAGGGCGUGcaGAUc -3' miRNA: 3'- -GCGUca-----GCGUGGUG--UCCCGCACc-CUA- -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 99916 | 0.66 | 0.812903 |
Target: 5'- aCGCGaucggCGUugCGCAGGGCGUaaucccgcacgcaGGGGg -3' miRNA: 3'- -GCGUca---GCGugGUGUCCCGCA-------------CCCUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 36727 | 0.66 | 0.788259 |
Target: 5'- gCGCAGUgGCGCCAcCAGGuGCacGUGGc-- -3' miRNA: 3'- -GCGUCAgCGUGGU-GUCC-CG--CACCcua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 153411 | 0.66 | 0.80538 |
Target: 5'- uGCAGgUGCGCCACc-GGCGUGGu-- -3' miRNA: 3'- gCGUCaGCGUGGUGucCCGCACCcua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 8631 | 0.66 | 0.80538 |
Target: 5'- cCGCGGggGC-CCAU--GGCGUGGGAg -3' miRNA: 3'- -GCGUCagCGuGGUGucCCGCACCCUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 40807 | 0.66 | 0.821935 |
Target: 5'- gCGCGGUCaGCuauucGCCuCGGGGCG-GGGc- -3' miRNA: 3'- -GCGUCAG-CG-----UGGuGUCCCGCaCCCua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 91596 | 0.66 | 0.788259 |
Target: 5'- aGUAGcCGCGCCGCAgcuucuuguGGGCcUGGGu- -3' miRNA: 3'- gCGUCaGCGUGGUGU---------CCCGcACCCua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 32675 | 0.66 | 0.816209 |
Target: 5'- aGCAaggagcugccggaucGagGCGCCACGGGGCuaauauagcuaggGUGGGGg -3' miRNA: 3'- gCGU---------------CagCGUGGUGUCCCG-------------CACCCUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 87719 | 0.66 | 0.829982 |
Target: 5'- uGCcGUCGCGCgCGCccGGcGGCGUGGuGGg -3' miRNA: 3'- gCGuCAGCGUG-GUG--UC-CCGCACC-CUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 181788 | 0.66 | 0.829982 |
Target: 5'- gGUAGUCGCgauccucguGCguCAGGGCG-GGGu- -3' miRNA: 3'- gCGUCAGCG---------UGguGUCCCGCaCCCua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 141916 | 0.66 | 0.817031 |
Target: 5'- aGCAGaCGCACUACAGccgccugaccgugcaGcGCGUGGGc- -3' miRNA: 3'- gCGUCaGCGUGGUGUC---------------C-CGCACCCua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 209540 | 0.67 | 0.780385 |
Target: 5'- cCGCGGUuaUGCGCCcgGCGGGGUGgcggcgacgguggcgGGGGUc -3' miRNA: 3'- -GCGUCA--GCGUGG--UGUCCCGCa--------------CCCUA- -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 129205 | 0.67 | 0.742445 |
Target: 5'- gGCGGuucgaccUCGuCGCCGCGGGGCGaGaGGAa -3' miRNA: 3'- gCGUC-------AGC-GUGGUGUCCCGCaC-CCUa -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 54895 | 0.67 | 0.752554 |
Target: 5'- aCGCAGUggcugCGCACCguuuGCAGgaucagcgccGGCGUGGGc- -3' miRNA: 3'- -GCGUCA-----GCGUGG----UGUC----------CCGCACCCua -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 76393 | 0.67 | 0.761644 |
Target: 5'- cCGCGGUgGCGCUgcuagcaccaGCGGcGGUGUGGuGGUg -3' miRNA: 3'- -GCGUCAgCGUGG----------UGUC-CCGCACC-CUA- -5' |
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14288 | 5' | -60.4 | NC_003521.1 | + | 198893 | 0.67 | 0.767945 |
Target: 5'- uCGCAGcCGCgugagaaagucguuGCCcaGCAGGGCGUaGaGGAUg -3' miRNA: 3'- -GCGUCaGCG--------------UGG--UGUCCCGCA-C-CCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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