miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 5628 1.05 0.003445
Target:  5'- uCGCAGUCGCACCACAGGGCGUGGGAUu -3'
miRNA:   3'- -GCGUCAGCGUGGUGUCCCGCACCCUA- -5'
14288 5' -60.4 NC_003521.1 + 6228 0.86 0.062915
Target:  5'- cCGCAGUCGCACCACAGcuCGUGGGAg -3'
miRNA:   3'- -GCGUCAGCGUGGUGUCccGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 145618 0.77 0.231977
Target:  5'- uGCAGUCGCACCcgguGCcGGGCGUGGa-- -3'
miRNA:   3'- gCGUCAGCGUGG----UGuCCCGCACCcua -5'
14288 5' -60.4 NC_003521.1 + 204069 0.77 0.242909
Target:  5'- cCGCAGUCGCACCACAcGuCGUGGGc- -3'
miRNA:   3'- -GCGUCAGCGUGGUGUcCcGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 161357 0.76 0.297457
Target:  5'- uGCAGaUCGUGCCGCGGGGCGUGa--- -3'
miRNA:   3'- gCGUC-AGCGUGGUGUCCCGCACccua -5'
14288 5' -60.4 NC_003521.1 + 36309 0.75 0.33166
Target:  5'- gGguGgggCGCACCcucaguCGGGGCGUGGGGa -3'
miRNA:   3'- gCguCa--GCGUGGu-----GUCCCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 198762 0.73 0.416674
Target:  5'- uCGCuGGUCGCGCCGCucguGGGCGaggUGGGu- -3'
miRNA:   3'- -GCG-UCAGCGUGGUGu---CCCGC---ACCCua -5'
14288 5' -60.4 NC_003521.1 + 155097 0.73 0.433504
Target:  5'- uCGCGG-CGCugCaggaGCAGGGCGUGGaGGa -3'
miRNA:   3'- -GCGUCaGCGugG----UGUCCCGCACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 167608 0.72 0.450723
Target:  5'- gCGCAGagGCGCCGCAGGcGCucGGGGUc -3'
miRNA:   3'- -GCGUCagCGUGGUGUCC-CGcaCCCUA- -5'
14288 5' -60.4 NC_003521.1 + 104771 0.72 0.459471
Target:  5'- gCGCAGcCGCugcccagguCCACAGGuGCGUGcGGAa -3'
miRNA:   3'- -GCGUCaGCGu--------GGUGUCC-CGCAC-CCUa -5'
14288 5' -60.4 NC_003521.1 + 128139 0.72 0.47187
Target:  5'- gGCGGccCGCGCuCggcgaaggccugcagGCAGGGCGUGGGGUc -3'
miRNA:   3'- gCGUCa-GCGUG-G---------------UGUCCCGCACCCUA- -5'
14288 5' -60.4 NC_003521.1 + 238359 0.72 0.486243
Target:  5'- gCGCcGUCGCguACCcauaGCGGGGCGcgGGGAUg -3'
miRNA:   3'- -GCGuCAGCG--UGG----UGUCCCGCa-CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 78494 0.72 0.495331
Target:  5'- cCGCAGUCGcCGCCuGCGGGuaGUaGGGAa -3'
miRNA:   3'- -GCGUCAGC-GUGG-UGUCCcgCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 40400 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 240627 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 78 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 109507 0.71 0.550369
Target:  5'- aGUGGUCGCGCCggccgcugcucgaGCAGGGCGUGu--- -3'
miRNA:   3'- gCGUCAGCGUGG-------------UGUCCCGCACccua -5'
14288 5' -60.4 NC_003521.1 + 7965 0.7 0.589701
Target:  5'- gCGguGUCGCGgccgggaggguCCGCGGcGGCGgGGGAg -3'
miRNA:   3'- -GCguCAGCGU-----------GGUGUC-CCGCaCCCUa -5'
14288 5' -60.4 NC_003521.1 + 186789 0.7 0.59938
Target:  5'- cCGCAGUCcacauguuucagGCGCCAC--GGCGUGGGc- -3'
miRNA:   3'- -GCGUCAG------------CGUGGUGucCCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 100495 0.69 0.628524
Target:  5'- cCGCcaGGUgGCACCGC-GGGCGUcGGAc -3'
miRNA:   3'- -GCG--UCAgCGUGGUGuCCCGCAcCCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.