miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 153411 0.66 0.80538
Target:  5'- uGCAGgUGCGCCACc-GGCGUGGu-- -3'
miRNA:   3'- gCGUCaGCGUGGUGucCCGCACCcua -5'
14288 5' -60.4 NC_003521.1 + 166873 0.68 0.705827
Target:  5'- gCGCAgGUCGUAcaucaaguCCGCGGGcGCGcGGGGUa -3'
miRNA:   3'- -GCGU-CAGCGU--------GGUGUCC-CGCaCCCUA- -5'
14288 5' -60.4 NC_003521.1 + 186524 0.68 0.705827
Target:  5'- gCGguGUCGC-CaGCGGGGgcucCGUGGGAg -3'
miRNA:   3'- -GCguCAGCGuGgUGUCCC----GCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 54895 0.67 0.752554
Target:  5'- aCGCAGUggcugCGCACCguuuGCAGgaucagcgccGGCGUGGGc- -3'
miRNA:   3'- -GCGUCA-----GCGUGG----UGUC----------CCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 135783 0.67 0.77063
Target:  5'- gGCAGUgGCGCUgcgggaggaggaGCAGcGGCGgaGGGAg -3'
miRNA:   3'- gCGUCAgCGUGG------------UGUC-CCGCa-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 138024 0.67 0.77063
Target:  5'- gCGCGugcGUCGCugccgGCgCACGGGGCuGUGGGu- -3'
miRNA:   3'- -GCGU---CAGCG-----UG-GUGUCCCG-CACCCua -5'
14288 5' -60.4 NC_003521.1 + 123188 0.67 0.779504
Target:  5'- gCGCAGUCGCAggcggaacgaCACcGGGuCGcUGGGAc -3'
miRNA:   3'- -GCGUCAGCGUg---------GUGuCCC-GC-ACCCUa -5'
14288 5' -60.4 NC_003521.1 + 209540 0.67 0.780385
Target:  5'- cCGCGGUuaUGCGCCcgGCGGGGUGgcggcgacgguggcgGGGGUc -3'
miRNA:   3'- -GCGUCA--GCGUGG--UGUCCCGCa--------------CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 105604 0.66 0.80538
Target:  5'- gCGCAGccgcucaggCGCugCAgCAGGGCGUGcucGGGc -3'
miRNA:   3'- -GCGUCa--------GCGugGU-GUCCCGCAC---CCUa -5'
14288 5' -60.4 NC_003521.1 + 71106 0.69 0.667383
Target:  5'- aCGCAcGUCGCuCUugGGGGaCGUcGGGGg -3'
miRNA:   3'- -GCGU-CAGCGuGGugUCCC-GCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 150961 0.69 0.657689
Target:  5'- uGCAGUCGCGCgACGcGGCGcUGGcGGc -3'
miRNA:   3'- gCGUCAGCGUGgUGUcCCGC-ACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 100495 0.69 0.628524
Target:  5'- cCGCcaGGUgGCACCGC-GGGCGUcGGAc -3'
miRNA:   3'- -GCG--UCAgCGUGGUGuCCCGCAcCCUa -5'
14288 5' -60.4 NC_003521.1 + 204069 0.77 0.242909
Target:  5'- cCGCAGUCGCACCACAcGuCGUGGGc- -3'
miRNA:   3'- -GCGUCAGCGUGGUGUcCcGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 128139 0.72 0.47187
Target:  5'- gGCGGccCGCGCuCggcgaaggccugcagGCAGGGCGUGGGGUc -3'
miRNA:   3'- gCGUCa-GCGUG-G---------------UGUCCCGCACCCUA- -5'
14288 5' -60.4 NC_003521.1 + 238359 0.72 0.486243
Target:  5'- gCGCcGUCGCguACCcauaGCGGGGCGcgGGGAUg -3'
miRNA:   3'- -GCGuCAGCG--UGG----UGUCCCGCa-CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 78494 0.72 0.495331
Target:  5'- cCGCAGUCGcCGCCuGCGGGuaGUaGGGAa -3'
miRNA:   3'- -GCGUCAGC-GUGG-UGUCCcgCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 78 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 240627 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 109507 0.71 0.550369
Target:  5'- aGUGGUCGCGCCggccgcugcucgaGCAGGGCGUGu--- -3'
miRNA:   3'- gCGUCAGCGUGG-------------UGUCCCGCACccua -5'
14288 5' -60.4 NC_003521.1 + 186789 0.7 0.59938
Target:  5'- cCGCAGUCcacauguuucagGCGCCAC--GGCGUGGGc- -3'
miRNA:   3'- -GCGUCAG------------CGUGGUGucCCGCACCCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.