miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 5628 1.05 0.003445
Target:  5'- uCGCAGUCGCACCACAGGGCGUGGGAUu -3'
miRNA:   3'- -GCGUCAGCGUGGUGUCCCGCACCCUA- -5'
14288 5' -60.4 NC_003521.1 + 198893 0.67 0.767945
Target:  5'- uCGCAGcCGCgugagaaagucguuGCCcaGCAGGGCGUaGaGGAUg -3'
miRNA:   3'- -GCGUCaGCG--------------UGG--UGUCCCGCA-C-CCUA- -5'
14288 5' -60.4 NC_003521.1 + 91596 0.66 0.788259
Target:  5'- aGUAGcCGCGCCGCAgcuucuuguGGGCcUGGGu- -3'
miRNA:   3'- gCGUCaGCGUGGUGU---------CCCGcACCCua -5'
14288 5' -60.4 NC_003521.1 + 162336 0.66 0.829982
Target:  5'- cCGCAGgcgGCgACUGC-GGGCGUGGGc- -3'
miRNA:   3'- -GCGUCag-CG-UGGUGuCCCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 198762 0.73 0.416674
Target:  5'- uCGCuGGUCGCGCCGCucguGGGCGaggUGGGu- -3'
miRNA:   3'- -GCG-UCAGCGUGGUGu---CCCGC---ACCCua -5'
14288 5' -60.4 NC_003521.1 + 155097 0.73 0.433504
Target:  5'- uCGCGG-CGCugCaggaGCAGGGCGUGGaGGa -3'
miRNA:   3'- -GCGUCaGCGugG----UGUCCCGCACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 104771 0.72 0.459471
Target:  5'- gCGCAGcCGCugcccagguCCACAGGuGCGUGcGGAa -3'
miRNA:   3'- -GCGUCaGCGu--------GGUGUCC-CGCAC-CCUa -5'
14288 5' -60.4 NC_003521.1 + 40400 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 171649 0.69 0.657689
Target:  5'- -cUAG-CGCGCCGCGgcGGGCGUcGGGAg -3'
miRNA:   3'- gcGUCaGCGUGGUGU--CCCGCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 76393 0.67 0.761644
Target:  5'- cCGCGGUgGCGCUgcuagcaccaGCGGcGGUGUGGuGGUg -3'
miRNA:   3'- -GCGUCAgCGUGG----------UGUC-CCGCACC-CUA- -5'
14288 5' -60.4 NC_003521.1 + 44059 0.68 0.705827
Target:  5'- cCGCGGUCGCGCCGgcCGGGGCa------ -3'
miRNA:   3'- -GCGUCAGCGUGGU--GUCCCGcacccua -5'
14288 5' -60.4 NC_003521.1 + 18732 0.69 0.638252
Target:  5'- aCGCuGcCgGCGCUGCAGGGCGggcugUGGGAg -3'
miRNA:   3'- -GCGuCaG-CGUGGUGUCCCGC-----ACCCUa -5'
14288 5' -60.4 NC_003521.1 + 6228 0.86 0.062915
Target:  5'- cCGCAGUCGCACCACAGcuCGUGGGAg -3'
miRNA:   3'- -GCGUCAGCGUGGUGUCccGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 129205 0.67 0.742445
Target:  5'- gGCGGuucgaccUCGuCGCCGCGGGGCGaGaGGAa -3'
miRNA:   3'- gCGUC-------AGC-GUGGUGUCCCGCaC-CCUa -5'
14288 5' -60.4 NC_003521.1 + 161357 0.76 0.297457
Target:  5'- uGCAGaUCGUGCCGCGGGGCGUGa--- -3'
miRNA:   3'- gCGUC-AGCGUGGUGUCCCGCACccua -5'
14288 5' -60.4 NC_003521.1 + 7965 0.7 0.589701
Target:  5'- gCGguGUCGCGgccgggaggguCCGCGGcGGCGgGGGAg -3'
miRNA:   3'- -GCguCAGCGU-----------GGUGUC-CCGCaCCCUa -5'
14288 5' -60.4 NC_003521.1 + 177770 0.67 0.75164
Target:  5'- uCGCGGUCGuCGCCagggccgACGGGGCcuguccgcugGUGGGc- -3'
miRNA:   3'- -GCGUCAGC-GUGG-------UGUCCCG----------CACCCua -5'
14288 5' -60.4 NC_003521.1 + 98195 0.67 0.77063
Target:  5'- cCGCGGUucuccuuguUGCugUcggcggGCAGcGGCGUGGGAg -3'
miRNA:   3'- -GCGUCA---------GCGugG------UGUC-CCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 36309 0.75 0.33166
Target:  5'- gGguGgggCGCACCcucaguCGGGGCGUGGGGa -3'
miRNA:   3'- gCguCa--GCGUGGu-----GUCCCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 167608 0.72 0.450723
Target:  5'- gCGCAGagGCGCCGCAGGcGCucGGGGUc -3'
miRNA:   3'- -GCGUCagCGUGGUGUCC-CGcaCCCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.