miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 78 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 5628 1.05 0.003445
Target:  5'- uCGCAGUCGCACCACAGGGCGUGGGAUu -3'
miRNA:   3'- -GCGUCAGCGUGGUGUCCCGCACCCUA- -5'
14288 5' -60.4 NC_003521.1 + 6228 0.86 0.062915
Target:  5'- cCGCAGUCGCACCACAGcuCGUGGGAg -3'
miRNA:   3'- -GCGUCAGCGUGGUGUCccGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 7965 0.7 0.589701
Target:  5'- gCGguGUCGCGgccgggaggguCCGCGGcGGCGgGGGAg -3'
miRNA:   3'- -GCguCAGCGU-----------GGUGUC-CCGCaCCCUa -5'
14288 5' -60.4 NC_003521.1 + 8631 0.66 0.80538
Target:  5'- cCGCGGggGC-CCAU--GGCGUGGGAg -3'
miRNA:   3'- -GCGUCagCGuGGUGucCCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 18732 0.69 0.638252
Target:  5'- aCGCuGcCgGCGCUGCAGGGCGggcugUGGGAg -3'
miRNA:   3'- -GCGuCaG-CGUGGUGUCCCGC-----ACCCUa -5'
14288 5' -60.4 NC_003521.1 + 32675 0.66 0.816209
Target:  5'- aGCAaggagcugccggaucGagGCGCCACGGGGCuaauauagcuaggGUGGGGg -3'
miRNA:   3'- gCGU---------------CagCGUGGUGUCCCG-------------CACCCUa -5'
14288 5' -60.4 NC_003521.1 + 36309 0.75 0.33166
Target:  5'- gGguGgggCGCACCcucaguCGGGGCGUGGGGa -3'
miRNA:   3'- gCguCa--GCGUGGu-----GUCCCGCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 36727 0.66 0.788259
Target:  5'- gCGCAGUgGCGCCAcCAGGuGCacGUGGc-- -3'
miRNA:   3'- -GCGUCAgCGUGGU-GUCC-CG--CACCcua -5'
14288 5' -60.4 NC_003521.1 + 40400 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 40807 0.66 0.821935
Target:  5'- gCGCGGUCaGCuauucGCCuCGGGGCG-GGGc- -3'
miRNA:   3'- -GCGUCAG-CG-----UGGuGUCCCGCaCCCua -5'
14288 5' -60.4 NC_003521.1 + 44059 0.68 0.705827
Target:  5'- cCGCGGUCGCGCCGgcCGGGGCa------ -3'
miRNA:   3'- -GCGUCAGCGUGGU--GUCCCGcacccua -5'
14288 5' -60.4 NC_003521.1 + 54895 0.67 0.752554
Target:  5'- aCGCAGUggcugCGCACCguuuGCAGgaucagcgccGGCGUGGGc- -3'
miRNA:   3'- -GCGUCA-----GCGUGG----UGUC----------CCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 55897 0.68 0.677052
Target:  5'- gCGCGGUCGCcgACCcuccgACGGcGGCGgcaacgGGGGUg -3'
miRNA:   3'- -GCGUCAGCG--UGG-----UGUC-CCGCa-----CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 71106 0.69 0.667383
Target:  5'- aCGCAcGUCGCuCUugGGGGaCGUcGGGGg -3'
miRNA:   3'- -GCGU-CAGCGuGGugUCCC-GCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 76393 0.67 0.761644
Target:  5'- cCGCGGUgGCGCUgcuagcaccaGCGGcGGUGUGGuGGUg -3'
miRNA:   3'- -GCGUCAgCGUGG----------UGUC-CCGCACC-CUA- -5'
14288 5' -60.4 NC_003521.1 + 78494 0.72 0.495331
Target:  5'- cCGCAGUCGcCGCCuGCGGGuaGUaGGGAa -3'
miRNA:   3'- -GCGUCAGC-GUGG-UGUCCcgCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 87719 0.66 0.829982
Target:  5'- uGCcGUCGCGCgCGCccGGcGGCGUGGuGGg -3'
miRNA:   3'- gCGuCAGCGUG-GUG--UC-CCGCACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 91596 0.66 0.788259
Target:  5'- aGUAGcCGCGCCGCAgcuucuuguGGGCcUGGGu- -3'
miRNA:   3'- gCGUCaGCGUGGUGU---------CCCGcACCCua -5'
14288 5' -60.4 NC_003521.1 + 98195 0.67 0.77063
Target:  5'- cCGCGGUucuccuuguUGCugUcggcggGCAGcGGCGUGGGAg -3'
miRNA:   3'- -GCGUCA---------GCGugG------UGUC-CCGCACCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.