miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 240627 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 238359 0.72 0.486243
Target:  5'- gCGCcGUCGCguACCcauaGCGGGGCGcgGGGAUg -3'
miRNA:   3'- -GCGuCAGCG--UGG----UGUCCCGCa-CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 209540 0.67 0.780385
Target:  5'- cCGCGGUuaUGCGCCcgGCGGGGUGgcggcgacgguggcgGGGGUc -3'
miRNA:   3'- -GCGUCA--GCGUGG--UGUCCCGCa--------------CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 204069 0.77 0.242909
Target:  5'- cCGCAGUCGCACCACAcGuCGUGGGc- -3'
miRNA:   3'- -GCGUCAGCGUGGUGUcCcGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 198893 0.67 0.767945
Target:  5'- uCGCAGcCGCgugagaaagucguuGCCcaGCAGGGCGUaGaGGAUg -3'
miRNA:   3'- -GCGUCaGCG--------------UGG--UGUCCCGCA-C-CCUA- -5'
14288 5' -60.4 NC_003521.1 + 198762 0.73 0.416674
Target:  5'- uCGCuGGUCGCGCCGCucguGGGCGaggUGGGu- -3'
miRNA:   3'- -GCG-UCAGCGUGGUGu---CCCGC---ACCCua -5'
14288 5' -60.4 NC_003521.1 + 195840 0.66 0.829982
Target:  5'- aGCgAGaucUCGCGCgGCAGGGUucgGGGAUc -3'
miRNA:   3'- gCG-UC---AGCGUGgUGUCCCGca-CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 187823 0.66 0.813732
Target:  5'- uCGUGGcUGUugCGCAGGGCGUuGcGGAc -3'
miRNA:   3'- -GCGUCaGCGugGUGUCCCGCA-C-CCUa -5'
14288 5' -60.4 NC_003521.1 + 186789 0.7 0.59938
Target:  5'- cCGCAGUCcacauguuucagGCGCCAC--GGCGUGGGc- -3'
miRNA:   3'- -GCGUCAG------------CGUGGUGucCCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 186524 0.68 0.705827
Target:  5'- gCGguGUCGC-CaGCGGGGgcucCGUGGGAg -3'
miRNA:   3'- -GCguCAGCGuGgUGUCCC----GCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 181788 0.66 0.829982
Target:  5'- gGUAGUCGCgauccucguGCguCAGGGCG-GGGu- -3'
miRNA:   3'- gCGUCAGCG---------UGguGUCCCGCaCCCua -5'
14288 5' -60.4 NC_003521.1 + 177770 0.67 0.75164
Target:  5'- uCGCGGUCGuCGCCagggccgACGGGGCcuguccgcugGUGGGc- -3'
miRNA:   3'- -GCGUCAGC-GUGG-------UGUCCCG----------CACCCua -5'
14288 5' -60.4 NC_003521.1 + 171649 0.69 0.657689
Target:  5'- -cUAG-CGCGCCGCGgcGGGCGUcGGGAg -3'
miRNA:   3'- gcGUCaGCGUGGUGU--CCCGCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 167608 0.72 0.450723
Target:  5'- gCGCAGagGCGCCGCAGGcGCucGGGGUc -3'
miRNA:   3'- -GCGUCagCGUGGUGUCC-CGcaCCCUA- -5'
14288 5' -60.4 NC_003521.1 + 166873 0.68 0.705827
Target:  5'- gCGCAgGUCGUAcaucaaguCCGCGGGcGCGcGGGGUa -3'
miRNA:   3'- -GCGU-CAGCGU--------GGUGUCC-CGCaCCCUA- -5'
14288 5' -60.4 NC_003521.1 + 162336 0.66 0.829982
Target:  5'- cCGCAGgcgGCgACUGC-GGGCGUGGGc- -3'
miRNA:   3'- -GCGUCag-CG-UGGUGuCCCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 161357 0.76 0.297457
Target:  5'- uGCAGaUCGUGCCGCGGGGCGUGa--- -3'
miRNA:   3'- gCGUC-AGCGUGGUGUCCCGCACccua -5'
14288 5' -60.4 NC_003521.1 + 155097 0.73 0.433504
Target:  5'- uCGCGG-CGCugCaggaGCAGGGCGUGGaGGa -3'
miRNA:   3'- -GCGUCaGCGugG----UGUCCCGCACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 153411 0.66 0.80538
Target:  5'- uGCAGgUGCGCCACc-GGCGUGGu-- -3'
miRNA:   3'- gCGUCaGCGUGGUGucCCGCACCcua -5'
14288 5' -60.4 NC_003521.1 + 150961 0.69 0.657689
Target:  5'- uGCAGUCGCGCgACGcGGCGcUGGcGGc -3'
miRNA:   3'- gCGUCAGCGUGgUGUcCCGC-ACC-CUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.