miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 3' -57.3 NC_003521.1 + 135806 0.66 0.928112
Target:  5'- aGCAGcGGcGGAGGGAGGcGCGGcgacgaacGCuCCCg -3'
miRNA:   3'- aCGUU-CCuCCUCUUUCC-UGCC--------CG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 240649 0.66 0.928112
Target:  5'- gUGCAGGGAGGccGAAGcGGC-GGCCg- -3'
miRNA:   3'- -ACGUUCCUCCucUUUC-CUGcCCGGgg -5'
14300 3' -57.3 NC_003521.1 + 174010 0.66 0.928112
Target:  5'- aGUcGGGGGGAGAGAuGGgagaggagacgGCGGuGgCCCg -3'
miRNA:   3'- aCGuUCCUCCUCUUU-CC-----------UGCC-CgGGG- -5'
14300 3' -57.3 NC_003521.1 + 100 0.66 0.928112
Target:  5'- gUGCAGGGAGGccGAAGcGGC-GGCCg- -3'
miRNA:   3'- -ACGUUCCUCCucUUUC-CUGcCCGGgg -5'
14300 3' -57.3 NC_003521.1 + 214282 0.66 0.937806
Target:  5'- cUGguAGGAGGAGGccAGGAU--GCCCa -3'
miRNA:   3'- -ACguUCCUCCUCUu-UCCUGccCGGGg -5'
14300 3' -57.3 NC_003521.1 + 173370 0.66 0.937806
Target:  5'- ---cGGGAGGAGAuggagugcuggGAGGAgcGGCUCCg -3'
miRNA:   3'- acguUCCUCCUCU-----------UUCCUgcCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 218723 0.66 0.93307
Target:  5'- gGCGGcGGGcGAGAAgcggcgucGGGACGGuCCCCc -3'
miRNA:   3'- aCGUU-CCUcCUCUU--------UCCUGCCcGGGG- -5'
14300 3' -57.3 NC_003521.1 + 36004 0.66 0.917533
Target:  5'- aGCGAcGGc-GAcGGAGGugGcGGCCCCa -3'
miRNA:   3'- aCGUU-CCucCUcUUUCCugC-CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 204724 0.66 0.91698
Target:  5'- gGCGGGGAGGGuggcGAGGGugGugauggaGGCgCCg -3'
miRNA:   3'- aCGUUCCUCCUc---UUUCCugC-------CCGgGG- -5'
14300 3' -57.3 NC_003521.1 + 124522 0.66 0.917533
Target:  5'- aGaCGAcGGAGGaAGAAgGGGACGaaaGGUCCCc -3'
miRNA:   3'- aC-GUU-CCUCC-UCUU-UCCUGC---CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 148672 0.66 0.922933
Target:  5'- gGCGAGccGGuGGAAGGAgcCGGGaagccCCCCg -3'
miRNA:   3'- aCGUUCcuCCuCUUUCCU--GCCC-----GGGG- -5'
14300 3' -57.3 NC_003521.1 + 43591 0.66 0.922933
Target:  5'- gGCAaaacggAGGGGGcgaGGAAAGaGACGGGgaaggaagaagUCCCg -3'
miRNA:   3'- aCGU------UCCUCC---UCUUUC-CUGCCC-----------GGGG- -5'
14300 3' -57.3 NC_003521.1 + 40422 0.66 0.928112
Target:  5'- gUGCAGGGAGGccGAAGcGGC-GGCCg- -3'
miRNA:   3'- -ACGUUCCUCCucUUUC-CUGcCCGGgg -5'
14300 3' -57.3 NC_003521.1 + 136032 0.66 0.937806
Target:  5'- aGCGAGGuggcGGuGAucgAGGGGCagguaaaGGCCCCc -3'
miRNA:   3'- aCGUUCCu---CCuCU---UUCCUGc------CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 155799 0.66 0.917533
Target:  5'- aGCucGGuGGGGGucaacuccAAGGuGCGGGCCUg -3'
miRNA:   3'- aCGuuCCuCCUCU--------UUCC-UGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 197069 0.66 0.93307
Target:  5'- cUGCAAGGucgucgagcAGGAG-GAGcGCGaGaGCCCCa -3'
miRNA:   3'- -ACGUUCC---------UCCUCuUUCcUGC-C-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 149697 0.66 0.915869
Target:  5'- cGCGaguauuacGGGAugccGGGGAAuccccgaccggcgcAGGcgcagACGGGCCCCu -3'
miRNA:   3'- aCGU--------UCCU----CCUCUU--------------UCC-----UGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 99931 0.66 0.919719
Target:  5'- cGCAGGGcguaaucccgcacgcAGGGGGgcGG-CGGcGCCUCg -3'
miRNA:   3'- aCGUUCC---------------UCCUCUuuCCuGCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 103602 0.66 0.922933
Target:  5'- gUGCGcGGGGGAucuGAaagAAGGGCGucccGGCCgCCg -3'
miRNA:   3'- -ACGUuCCUCCU---CU---UUCCUGC----CCGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 77285 0.66 0.937806
Target:  5'- aGCAGGGuGGAGuagcacAGGuugUGGGCCa- -3'
miRNA:   3'- aCGUUCCuCCUCuu----UCCu--GCCCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.