miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 3' -57.3 NC_003521.1 + 178773 0.72 0.672877
Target:  5'- aGC-AGGAccAGGGucucguuguugcAGGACGGGCCCCc -3'
miRNA:   3'- aCGuUCCUccUCUU------------UCCUGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 144679 0.72 0.633556
Target:  5'- cUGCGA-GAGGAGAGAGaGCGGGaCgCCg -3'
miRNA:   3'- -ACGUUcCUCCUCUUUCcUGCCC-GgGG- -5'
14300 3' -57.3 NC_003521.1 + 71275 0.72 0.633556
Target:  5'- gGCgGAGGcGGGGGccgcGGcACGGGCCCCu -3'
miRNA:   3'- aCG-UUCCuCCUCUuu--CC-UGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 83751 0.72 0.633556
Target:  5'- cGCGGGGGGccuGGGAcaGGGuGGCGGcGCCCCc -3'
miRNA:   3'- aCGUUCCUC---CUCU--UUC-CUGCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 91357 0.72 0.643406
Target:  5'- cGgGAGGAcgguGGGGGAGGGGgccgaacccCGGGCCCg -3'
miRNA:   3'- aCgUUCCU----CCUCUUUCCU---------GCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 235590 0.72 0.653248
Target:  5'- gUGC-GGGAGGAcGAGAGGcggacucggGCGGaGCCCg -3'
miRNA:   3'- -ACGuUCCUCCU-CUUUCC---------UGCC-CGGGg -5'
14300 3' -57.3 NC_003521.1 + 172922 0.72 0.663074
Target:  5'- ---uGGGAGGAGGAGGGAgGGuGCaCCUc -3'
miRNA:   3'- acguUCCUCCUCUUUCCUgCC-CG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 216738 0.72 0.663074
Target:  5'- gGCGGaGAGGGGAugAGGcGACGGGCUCa -3'
miRNA:   3'- aCGUUcCUCCUCU--UUC-CUGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 100231 0.72 0.672877
Target:  5'- gGCGAGGuGGAGcu-GGGCGaGGUgCCCg -3'
miRNA:   3'- aCGUUCCuCCUCuuuCCUGC-CCG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 113372 0.73 0.598136
Target:  5'- gGCGAGGAGGAGGguuacggcggacgccGcGGGCGGGUgCg -3'
miRNA:   3'- aCGUUCCUCCUCU---------------UuCCUGCCCGgGg -5'
14300 3' -57.3 NC_003521.1 + 146153 0.73 0.594214
Target:  5'- cGCGAGcgcGAGGAGAgcGAGG-UGGGCCgCg -3'
miRNA:   3'- aCGUUC---CUCCUCU--UUCCuGCCCGGgG- -5'
14300 3' -57.3 NC_003521.1 + 92086 0.73 0.574671
Target:  5'- gGUcGGGGGGuGcgcAGGGCGGuGCCCCg -3'
miRNA:   3'- aCGuUCCUCCuCuu-UCCUGCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 113567 0.82 0.215584
Target:  5'- cGCGAGGAGGAcgcGguGGGGCuGGGCCUCg -3'
miRNA:   3'- aCGUUCCUCCU---CuuUCCUG-CCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 29387 0.8 0.265816
Target:  5'- cGCGAGGccgAGGAGGacgacgacGAGGAcagucCGGGCCCCg -3'
miRNA:   3'- aCGUUCC---UCCUCU--------UUCCU-----GCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 34085 0.76 0.435647
Target:  5'- gUGCAGGGAGGuGuggucGAUGGGCCCg -3'
miRNA:   3'- -ACGUUCCUCCuCuuuc-CUGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 181511 0.74 0.535129
Target:  5'- gGUAcGGAGGAGAAGGuGugcgcgaagacuaGCGGGCCgCCg -3'
miRNA:   3'- aCGUuCCUCCUCUUUC-C-------------UGCCCGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 95161 0.74 0.536083
Target:  5'- gGCAAGGAGucGGccGGcCGGGCCCa -3'
miRNA:   3'- aCGUUCCUCcuCUuuCCuGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 5656 0.74 0.554314
Target:  5'- gGCGGcGGAGGGuGggGGGucgagacACGGGCgCCCg -3'
miRNA:   3'- aCGUU-CCUCCU-CuuUCC-------UGCCCG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 36154 0.73 0.574671
Target:  5'- cUGCccGAGGAGGAGGAcaccccGGACGGcguGCCCa -3'
miRNA:   3'- -ACG--UUCCUCCUCUUu-----CCUGCC---CGGGg -5'
14300 3' -57.3 NC_003521.1 + 160510 0.73 0.574671
Target:  5'- cGCGgcGGGAGGAG--GGGGCGGcaGCCUCc -3'
miRNA:   3'- aCGU--UCCUCCUCuuUCCUGCC--CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.