miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 3' -57.3 NC_003521.1 + 634 1.12 0.002236
Target:  5'- cUGCAAGGAGGAGAAAGGACGGGCCCCg -3'
miRNA:   3'- -ACGUUCCUCCUCUUUCCUGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 40955 1.12 0.002236
Target:  5'- cUGCAAGGAGGAGAAAGGACGGGCCCCg -3'
miRNA:   3'- -ACGUUCCUCCUCUUUCCUGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 113567 0.82 0.215584
Target:  5'- cGCGAGGAGGAcgcGguGGGGCuGGGCCUCg -3'
miRNA:   3'- aCGUUCCUCCU---CuuUCCUG-CCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 29387 0.8 0.265816
Target:  5'- cGCGAGGccgAGGAGGacgacgacGAGGAcagucCGGGCCCCg -3'
miRNA:   3'- aCGUUCC---UCCUCU--------UUCCU-----GCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 148389 0.8 0.278192
Target:  5'- gUGCGGGGAGGcuGggGGGugaGGGCUCCa -3'
miRNA:   3'- -ACGUUCCUCCu-CuuUCCug-CCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 19088 0.76 0.413509
Target:  5'- cGUGAGGAGGAGGgggacgggGAGGgagacgacgcgggugGCGGGCCgCCg -3'
miRNA:   3'- aCGUUCCUCCUCU--------UUCC---------------UGCCCGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 34085 0.76 0.435647
Target:  5'- gUGCAGGGAGGuGuggucGAUGGGCCCg -3'
miRNA:   3'- -ACGUUCCUCCuCuuuc-CUGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 156976 0.75 0.480061
Target:  5'- --gGAGGAGGAGGAgucgauggagGGGACGGGUaCCUa -3'
miRNA:   3'- acgUUCCUCCUCUU----------UCCUGCCCG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 188509 0.74 0.517124
Target:  5'- cGcCGAGauacGAGGAGGccGG-CGGGCCCCa -3'
miRNA:   3'- aC-GUUC----CUCCUCUuuCCuGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 181511 0.74 0.535129
Target:  5'- gGUAcGGAGGAGAAGGuGugcgcgaagacuaGCGGGCCgCCg -3'
miRNA:   3'- aCGUuCCUCCUCUUUC-C-------------UGCCCGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 148627 0.74 0.536083
Target:  5'- aGCAGGGGcGGGGGAGGGGaGGccagggcaucGCCCCg -3'
miRNA:   3'- aCGUUCCU-CCUCUUUCCUgCC----------CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 95161 0.74 0.536083
Target:  5'- gGCAAGGAGucGGccGGcCGGGCCCa -3'
miRNA:   3'- aCGUUCCUCcuCUuuCCuGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 5656 0.74 0.554314
Target:  5'- gGCGGcGGAGGGuGggGGGucgagacACGGGCgCCCg -3'
miRNA:   3'- aCGUU-CCUCCU-CuuUCC-------UGCCCG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 183271 0.74 0.555279
Target:  5'- cGCGAGGAcGAG-GAGGAUuucgGGGCCUCg -3'
miRNA:   3'- aCGUUCCUcCUCuUUCCUG----CCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 92086 0.73 0.574671
Target:  5'- gGUcGGGGGGuGcgcAGGGCGGuGCCCCg -3'
miRNA:   3'- aCGuUCCUCCuCuu-UCCUGCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 160510 0.73 0.574671
Target:  5'- cGCGgcGGGAGGAG--GGGGCGGcaGCCUCc -3'
miRNA:   3'- aCGU--UCCUCCUCuuUCCUGCC--CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 36154 0.73 0.574671
Target:  5'- cUGCccGAGGAGGAGGAcaccccGGACGGcguGCCCa -3'
miRNA:   3'- -ACG--UUCCUCCUCUUu-----CCUGCC---CGGGg -5'
14300 3' -57.3 NC_003521.1 + 33605 0.73 0.583449
Target:  5'- cGCAcGGGAGGAGAggaaccgGAGGACGauGCCgCCg -3'
miRNA:   3'- aCGU-UCCUCCUCU-------UUCCUGCc-CGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 4212 0.73 0.584426
Target:  5'- aGCgGAGGGcGGGAAGGGuguCGGaGCCCCg -3'
miRNA:   3'- aCG-UUCCUcCUCUUUCCu--GCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 18972 0.73 0.584426
Target:  5'- -aCGAGGAGGGGGucGAGGACGcGCCgCg -3'
miRNA:   3'- acGUUCCUCCUCU--UUCCUGCcCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.