miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 3' -57.3 NC_003521.1 + 100 0.66 0.928112
Target:  5'- gUGCAGGGAGGccGAAGcGGC-GGCCg- -3'
miRNA:   3'- -ACGUUCCUCCucUUUC-CUGcCCGGgg -5'
14300 3' -57.3 NC_003521.1 + 634 1.12 0.002236
Target:  5'- cUGCAAGGAGGAGAAAGGACGGGCCCCg -3'
miRNA:   3'- -ACGUUCCUCCUCUUUCCUGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 1839 0.69 0.828249
Target:  5'- aGCAuGGcGGAcGAcagaccGGGACGGGgCCCg -3'
miRNA:   3'- aCGUuCCuCCU-CUu-----UCCUGCCCgGGG- -5'
14300 3' -57.3 NC_003521.1 + 2762 0.68 0.873662
Target:  5'- cUGCAAagggacgacGGAGGuGAAGGaugcGugGGGUUCCa -3'
miRNA:   3'- -ACGUU---------CCUCCuCUUUC----CugCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 4212 0.73 0.584426
Target:  5'- aGCgGAGGGcGGGAAGGGuguCGGaGCCCCg -3'
miRNA:   3'- aCG-UUCCUcCUCUUUCCu--GCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 4248 0.7 0.758762
Target:  5'- aGaCGGGGAGGAGGAcgagaAGGACGGcggaGCCg- -3'
miRNA:   3'- aC-GUUCCUCCUCUU-----UCCUGCC----CGGgg -5'
14300 3' -57.3 NC_003521.1 + 5656 0.74 0.554314
Target:  5'- gGCGGcGGAGGGuGggGGGucgagacACGGGCgCCCg -3'
miRNA:   3'- aCGUU-CCUCCU-CuuUCC-------UGCCCG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 6493 0.66 0.931606
Target:  5'- gGCAGcGGAGGcggugacggcAGAggcucaccggugacGAGGGCGGucugcgucccGCCCCa -3'
miRNA:   3'- aCGUU-CCUCC----------UCU--------------UUCCUGCC----------CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 7729 0.67 0.911337
Target:  5'- gGUggGGAGGGcggcgcgagcggcGGAGGcGGCGGcaGUCCCa -3'
miRNA:   3'- aCGuuCCUCCU-------------CUUUC-CUGCC--CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 13908 0.66 0.928112
Target:  5'- gGCGcGGAGGGGGccgcgGAGGccGCGcuGGCCgCCg -3'
miRNA:   3'- aCGUuCCUCCUCU-----UUCC--UGC--CCGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 16766 0.67 0.906071
Target:  5'- gGaCGAGGAGGGuGAcgaagagucccAGGGGCGacGGCgCCCg -3'
miRNA:   3'- aC-GUUCCUCCU-CU-----------UUCCUGC--CCG-GGG- -5'
14300 3' -57.3 NC_003521.1 + 17069 0.67 0.900013
Target:  5'- aGCGAGGAcGAcgaguGGGAGGAUuuGGGCUUCg -3'
miRNA:   3'- aCGUUCCUcCU-----CUUUCCUG--CCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 17466 0.7 0.757843
Target:  5'- cGCucGGAGGAGAGAcGACGGcaccgguagcggcGCCgCCg -3'
miRNA:   3'- aCGuuCCUCCUCUUUcCUGCC-------------CGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 18972 0.73 0.584426
Target:  5'- -aCGAGGAGGGGGucGAGGACGcGCCgCg -3'
miRNA:   3'- acGUUCCUCCUCU--UUCCUGCcCGGgG- -5'
14300 3' -57.3 NC_003521.1 + 19088 0.76 0.413509
Target:  5'- cGUGAGGAGGAGGgggacgggGAGGgagacgacgcgggugGCGGGCCgCCg -3'
miRNA:   3'- aCGUUCCUCCUCU--------UUCC---------------UGCCCGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 19292 0.66 0.93307
Target:  5'- --gAGGGAgGGAGggGGGACGa-CUCCg -3'
miRNA:   3'- acgUUCCU-CCUCuuUCCUGCccGGGG- -5'
14300 3' -57.3 NC_003521.1 + 26058 0.68 0.864396
Target:  5'- aGCGGGaGGGGGGAGAGGaggaagaggagacgGCGGcGCUgaCCg -3'
miRNA:   3'- aCGUUC-CUCCUCUUUCC--------------UGCC-CGG--GG- -5'
14300 3' -57.3 NC_003521.1 + 28059 0.69 0.820065
Target:  5'- gGCGggggagagacAGGAGGGGGGAGGACGacGGCg-- -3'
miRNA:   3'- aCGU----------UCCUCCUCUUUCCUGC--CCGggg -5'
14300 3' -57.3 NC_003521.1 + 29387 0.8 0.265816
Target:  5'- cGCGAGGccgAGGAGGacgacgacGAGGAcagucCGGGCCCCg -3'
miRNA:   3'- aCGUUCC---UCCUCU--------UUCCU-----GCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 29985 0.66 0.93307
Target:  5'- cUGgAcGGAGG-GAGGGGACGaGCgCCa -3'
miRNA:   3'- -ACgUuCCUCCuCUUUCCUGCcCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.