miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14302 3' -59.9 NC_003521.1 + 221744 0.66 0.863402
Target:  5'- -cCCCCUccUCCUCAcGGcCCAGCUgggaggACGg -3'
miRNA:   3'- gaGGGGA--AGGGGU-CCuGGUCGGa-----UGC- -5'
14302 3' -59.9 NC_003521.1 + 35605 0.66 0.859077
Target:  5'- gUCCCCUgauccgccugccggCCCU-GGACgGGCCUcCGg -3'
miRNA:   3'- gAGGGGAa-------------GGGGuCCUGgUCGGAuGC- -5'
14302 3' -59.9 NC_003521.1 + 114043 0.66 0.856158
Target:  5'- gCUCUCC-UCCUC--GACCAGCCUgaACGu -3'
miRNA:   3'- -GAGGGGaAGGGGucCUGGUCGGA--UGC- -5'
14302 3' -59.9 NC_003521.1 + 159806 0.66 0.848733
Target:  5'- aCUCCCgagUUCgUCAcGGACCGGCCgugagGCGc -3'
miRNA:   3'- -GAGGGg--AAGgGGU-CCUGGUCGGa----UGC- -5'
14302 3' -59.9 NC_003521.1 + 79309 0.66 0.841132
Target:  5'- uCUUCUCUUUCCCAGGAagagCAGCaaGCa -3'
miRNA:   3'- -GAGGGGAAGGGGUCCUg---GUCGgaUGc -5'
14302 3' -59.9 NC_003521.1 + 60783 0.66 0.841132
Target:  5'- cCUCCUCUUCCCauuucuACCAGCCgcuggACa -3'
miRNA:   3'- -GAGGGGAAGGGgucc--UGGUCGGa----UGc -5'
14302 3' -59.9 NC_003521.1 + 89232 0.66 0.841132
Target:  5'- cCUCCCaagauUUCCCCAucGGGCguGCUgacGCGg -3'
miRNA:   3'- -GAGGGg----AAGGGGU--CCUGguCGGa--UGC- -5'
14302 3' -59.9 NC_003521.1 + 170453 0.66 0.841132
Target:  5'- gUCCCCUcgcgCCCCAGucaugucgccGACUAGCgCgGCGa -3'
miRNA:   3'- gAGGGGAa---GGGGUC----------CUGGUCG-GaUGC- -5'
14302 3' -59.9 NC_003521.1 + 201215 0.66 0.841132
Target:  5'- gUCUgC-UCCCgCuGGGCCGGCCgUACGg -3'
miRNA:   3'- gAGGgGaAGGG-GuCCUGGUCGG-AUGC- -5'
14302 3' -59.9 NC_003521.1 + 210260 0.66 0.841132
Target:  5'- cCUgCCCUaCCCCgAGGGCUAcacccuguucGUCUGCGa -3'
miRNA:   3'- -GAgGGGAaGGGG-UCCUGGU----------CGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 90818 0.66 0.833362
Target:  5'- -cCCCCUUCCCCGGGgaugggaggcACCcccaauagAGCaUGCGc -3'
miRNA:   3'- gaGGGGAAGGGGUCC----------UGG--------UCGgAUGC- -5'
14302 3' -59.9 NC_003521.1 + 42518 0.66 0.833362
Target:  5'- aUCCCCcacCCCCAGGGaacuCCAGUCa--- -3'
miRNA:   3'- gAGGGGaa-GGGGUCCU----GGUCGGaugc -5'
14302 3' -59.9 NC_003521.1 + 148533 0.67 0.817337
Target:  5'- cCUCCcgcgCCUUCCCCgAGGACgCGGUUUgaACGc -3'
miRNA:   3'- -GAGG----GGAAGGGG-UCCUG-GUCGGA--UGC- -5'
14302 3' -59.9 NC_003521.1 + 236655 0.67 0.817337
Target:  5'- gUCCCCUUCCUCGuaGGCUGGuCCUGgGg -3'
miRNA:   3'- gAGGGGAAGGGGUc-CUGGUC-GGAUgC- -5'
14302 3' -59.9 NC_003521.1 + 119315 0.67 0.800711
Target:  5'- --gUCCUUCCaCgAGGacguGCCGGCCUGCa -3'
miRNA:   3'- gagGGGAAGG-GgUCC----UGGUCGGAUGc -5'
14302 3' -59.9 NC_003521.1 + 153069 0.67 0.79219
Target:  5'- cCUCCUCcgCCgCCGGGGCCcgGGCCgggGCc -3'
miRNA:   3'- -GAGGGGaaGG-GGUCCUGG--UCGGa--UGc -5'
14302 3' -59.9 NC_003521.1 + 192572 0.67 0.79219
Target:  5'- uCUCuCCCUUCCCCcgcGGAacgCAGgCUGCu -3'
miRNA:   3'- -GAG-GGGAAGGGGu--CCUg--GUCgGAUGc -5'
14302 3' -59.9 NC_003521.1 + 120520 0.67 0.79219
Target:  5'- aUCUCCUUCgCCCGGGGaagGGCCcucgGCGg -3'
miRNA:   3'- gAGGGGAAG-GGGUCCUgg-UCGGa---UGC- -5'
14302 3' -59.9 NC_003521.1 + 142533 0.67 0.783541
Target:  5'- cCUCCUCUUCCCUgAGGAgugaCGGCUUGuCGc -3'
miRNA:   3'- -GAGGGGAAGGGG-UCCUg---GUCGGAU-GC- -5'
14302 3' -59.9 NC_003521.1 + 229050 0.67 0.775652
Target:  5'- aCUCCUCgcagcagaugagccgUCCCCAGGGCgAGUCggGCc -3'
miRNA:   3'- -GAGGGGa--------------AGGGGUCCUGgUCGGa-UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.