Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14302 | 3' | -59.9 | NC_003521.1 | + | 125076 | 0.78 | 0.241899 |
Target: 5'- aUCUCCUUCCCCgAGGACCuGGCCcGCa -3' miRNA: 3'- gAGGGGAAGGGG-UCCUGG-UCGGaUGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 42518 | 0.66 | 0.833362 |
Target: 5'- aUCCCCcacCCCCAGGGaacuCCAGUCa--- -3' miRNA: 3'- gAGGGGaa-GGGGUCCU----GGUCGGaugc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 60783 | 0.66 | 0.841132 |
Target: 5'- cCUCCUCUUCCCauuucuACCAGCCgcuggACa -3' miRNA: 3'- -GAGGGGAAGGGgucc--UGGUCGGa----UGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 35605 | 0.66 | 0.859077 |
Target: 5'- gUCCCCUgauccgccugccggCCCU-GGACgGGCCUcCGg -3' miRNA: 3'- gAGGGGAa-------------GGGGuCCUGgUCGGAuGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 1150 | 0.69 | 0.68111 |
Target: 5'- gCUgCCg-UCCCCGGGAgCCAcggcgccGCCUACGg -3' miRNA: 3'- -GAgGGgaAGGGGUCCU-GGU-------CGGAUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 107058 | 0.69 | 0.69163 |
Target: 5'- aCUCCgCCgcgUCCCCGGaaucGCCGGgCCUGCc -3' miRNA: 3'- -GAGG-GGa--AGGGGUCc---UGGUC-GGAUGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 149472 | 0.69 | 0.709669 |
Target: 5'- cCUCCCCcaccgUCCUCccGACCAgcaccucGCCUGCGc -3' miRNA: 3'- -GAGGGGa----AGGGGucCUGGU-------CGGAUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 112477 | 0.68 | 0.729358 |
Target: 5'- uUCUUCUUCCCCGuGGGCCuguaCCUGCc -3' miRNA: 3'- gAGGGGAAGGGGU-CCUGGuc--GGAUGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 240809 | 0.68 | 0.738622 |
Target: 5'- -cCCCCaccCCCCGGGACCcGCa-GCGg -3' miRNA: 3'- gaGGGGaa-GGGGUCCUGGuCGgaUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 236655 | 0.67 | 0.817337 |
Target: 5'- gUCCCCUUCCUCGuaGGCUGGuCCUGgGg -3' miRNA: 3'- gAGGGGAAGGGGUc-CUGGUC-GGAUgC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 140596 | 0.67 | 0.774769 |
Target: 5'- cCUCgCCCagCUCCAccucGCCGGCCUACGa -3' miRNA: 3'- -GAG-GGGaaGGGGUcc--UGGUCGGAUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 260 | 0.68 | 0.738622 |
Target: 5'- -cCCCCaccCCCCGGGACCcGCa-GCGg -3' miRNA: 3'- gaGGGGaa-GGGGUCCUGGuCGgaUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 988 | 0.7 | 0.604853 |
Target: 5'- gUCUgC-UCCCguGGGCCGGCCgUACGg -3' miRNA: 3'- gAGGgGaAGGGguCCUGGUCGG-AUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 120520 | 0.67 | 0.79219 |
Target: 5'- aUCUCCUUCgCCCGGGGaagGGCCcucgGCGg -3' miRNA: 3'- gAGGGGAAG-GGGUCCUgg-UCGGa---UGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 66287 | 0.69 | 0.662841 |
Target: 5'- aCUCCgCCUUCCCCAagaccacuaauGGAaCCAGC--GCGg -3' miRNA: 3'- -GAGG-GGAAGGGGU-----------CCU-GGUCGgaUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 140694 | 0.68 | 0.738622 |
Target: 5'- ---gCCUUCCCgCAGGaccGCCAGCC-GCGg -3' miRNA: 3'- gaggGGAAGGG-GUCC---UGGUCGGaUGC- -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 119315 | 0.67 | 0.800711 |
Target: 5'- --gUCCUUCCaCgAGGacguGCCGGCCUGCa -3' miRNA: 3'- gagGGGAAGG-GgUCC----UGGUCGGAUGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 79309 | 0.66 | 0.841132 |
Target: 5'- uCUUCUCUUUCCCAGGAagagCAGCaaGCa -3' miRNA: 3'- -GAGGGGAAGGGGUCCUg---GUCGgaUGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 236589 | 0.69 | 0.662841 |
Target: 5'- cCUCCCCgUCucgguccuccuCCCGGGGCCGGCUU-Ca -3' miRNA: 3'- -GAGGGGaAG-----------GGGUCCUGGUCGGAuGc -5' |
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14302 | 3' | -59.9 | NC_003521.1 | + | 215977 | 0.69 | 0.701147 |
Target: 5'- gCUUCCUUUUCUgAGGugCGGCCaGCGc -3' miRNA: 3'- -GAGGGGAAGGGgUCCugGUCGGaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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