miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 76675 0.66 0.985525
Target:  5'- -gCGGACUgCGaGGACgcugGGGGAcAGCGGa -3'
miRNA:   3'- aaGCUUGA-GCcCCUG----CCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 179728 0.66 0.985525
Target:  5'- aUCGuACUCGGGuuccuUGaGGGUGACGGg -3'
miRNA:   3'- aAGCuUGAGCCCcu---GCcCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 133206 0.66 0.985525
Target:  5'- -aCGAccGCggUCGGGGcGCGGGuucaggggcGAUGGCGGu -3'
miRNA:   3'- aaGCU--UG--AGCCCC-UGCCC---------CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 209571 0.66 0.985525
Target:  5'- -aCGGuggCGGGGGucCGGGGGcgcacgUAGCGGa -3'
miRNA:   3'- aaGCUugaGCCCCU--GCCCCU------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 13478 0.66 0.983801
Target:  5'- gUCGAcGgUCuGGGcGACGGGGAacGugGGg -3'
miRNA:   3'- aAGCU-UgAG-CCC-CUGCCCCUa-UugCC- -5'
14308 5' -54.8 NC_003521.1 + 148302 0.66 0.983801
Target:  5'- -cUGAgGCUCGGGacuagcaaGCGGGGGUGaggugGCGGa -3'
miRNA:   3'- aaGCU-UGAGCCCc-------UGCCCCUAU-----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 106105 0.66 0.983801
Target:  5'- --aGGcCUCGGGcACGGGcGUGGCGGc -3'
miRNA:   3'- aagCUuGAGCCCcUGCCCcUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 195836 0.66 0.982694
Target:  5'- aUCGAGCgagaucucgcgcggCaGGGuuCGGGGAUcGCGGu -3'
miRNA:   3'- aAGCUUGa-------------GcCCCu-GCCCCUAuUGCC- -5'
14308 5' -54.8 NC_003521.1 + 217638 0.66 0.981729
Target:  5'- cUCGGcguGgUCGGGGGgcauggcgggaucCGGGGGUuuccACGGg -3'
miRNA:   3'- aAGCU---UgAGCCCCU-------------GCCCCUAu---UGCC- -5'
14308 5' -54.8 NC_003521.1 + 34064 0.66 0.979891
Target:  5'- cUUGAGCUCGGGGuugaccucguGCaGGGaGGUGugGu -3'
miRNA:   3'- aAGCUUGAGCCCC----------UG-CCC-CUAUugCc -5'
14308 5' -54.8 NC_003521.1 + 113362 0.66 0.979891
Target:  5'- -aCGGGC-CGGGGGCGaGGAgGAgGGu -3'
miRNA:   3'- aaGCUUGaGCCCCUGCcCCUaUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 123563 0.66 0.977691
Target:  5'- -cCGAcgaCGGcGGugGcGGGAUGGCGGc -3'
miRNA:   3'- aaGCUugaGCC-CCugC-CCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 173652 0.66 0.977691
Target:  5'- gUUCGGGCggcugCGcGGGACccaGGGGu--ACGGa -3'
miRNA:   3'- -AAGCUUGa----GC-CCCUG---CCCCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 187888 0.66 0.977691
Target:  5'- cUCGGGCggcaCGGGcGGCGGGGGca--GGu -3'
miRNA:   3'- aAGCUUGa---GCCC-CUGCCCCUauugCC- -5'
14308 5' -54.8 NC_003521.1 + 207662 0.66 0.977462
Target:  5'- aUCGGGa--GGGGGCaucgcgaGGGaGAUGACGGc -3'
miRNA:   3'- aAGCUUgagCCCCUG-------CCC-CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 37530 0.67 0.972768
Target:  5'- -aCGucCUgGGGGugggcaGCGGGGGUcGCGGc -3'
miRNA:   3'- aaGCuuGAgCCCC------UGCCCCUAuUGCC- -5'
14308 5' -54.8 NC_003521.1 + 19093 0.67 0.971149
Target:  5'- --gGAGgagGGGGACGGGGAgggagacgacgcgggUGGCGGg -3'
miRNA:   3'- aagCUUgagCCCCUGCCCCU---------------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 132983 0.67 0.970032
Target:  5'- --gGGACgguaaCGGGGGacCGGGGuuggGACGGg -3'
miRNA:   3'- aagCUUGa----GCCCCU--GCCCCua--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 101843 0.67 0.970032
Target:  5'- -gCGGGCUCcGGGuuGuGGAUGGCGGa -3'
miRNA:   3'- aaGCUUGAGcCCCugCcCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 170520 0.67 0.967104
Target:  5'- -aUGAcgGCgugugaCGGGGACGGGGGgcagGAgGGu -3'
miRNA:   3'- aaGCU--UGa-----GCCCCUGCCCCUa---UUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.