miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 156691 0.73 0.754364
Target:  5'- cUUCGcGCUCGGGGAaaaggugcuggcCGGGGAggAGCGc -3'
miRNA:   3'- -AAGCuUGAGCCCCU------------GCCCCUa-UUGCc -5'
14308 5' -54.8 NC_003521.1 + 164205 0.68 0.949422
Target:  5'- --gGAACggCGGGGcgGCGGuGGUAGCGGc -3'
miRNA:   3'- aagCUUGa-GCCCC--UGCCcCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 69732 0.67 0.96398
Target:  5'- -gCGGuaaCGGcGGGCGGGGAggcGGCGGu -3'
miRNA:   3'- aaGCUugaGCC-CCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 76675 0.66 0.985525
Target:  5'- -gCGGACUgCGaGGACgcugGGGGAcAGCGGa -3'
miRNA:   3'- aaGCUUGA-GCcCCUG----CCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 148507 0.72 0.824732
Target:  5'- -gCGGAUgggaUCcGGGACGGGGGUGGgGGa -3'
miRNA:   3'- aaGCUUG----AGcCCCUGCCCCUAUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 38233 0.7 0.870859
Target:  5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3'
miRNA:   3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 39222 0.7 0.884689
Target:  5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3'
miRNA:   3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 102964 0.7 0.897052
Target:  5'- cUCGGGCgUCGGGGcucugGCGGGGcgGcccagccGCGGc -3'
miRNA:   3'- aAGCUUG-AGCCCC-----UGCCCCuaU-------UGCC- -5'
14308 5' -54.8 NC_003521.1 + 43571 0.69 0.909809
Target:  5'- -cCGcuGACUgGgGGGACGGGGGcaaAACGGa -3'
miRNA:   3'- aaGC--UUGAgC-CCCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 98219 0.68 0.949422
Target:  5'- -gCGGGCagcggcgUGGGaGGCGGGGA-GGCGGg -3'
miRNA:   3'- aaGCUUGa------GCCC-CUGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 182599 0.68 0.940855
Target:  5'- -aCGggUuUCGGGaagaaGACGGGGAUaaucugggagGACGGg -3'
miRNA:   3'- aaGCuuG-AGCCC-----CUGCCCCUA----------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 100368 0.69 0.909809
Target:  5'- -gCGGACgggugaCGGGGAcggcacggaggcCGGGGAgaaGACGGg -3'
miRNA:   3'- aaGCUUGa-----GCCCCU------------GCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 120555 0.73 0.772726
Target:  5'- -gCGGuCcCGGGGGagcgccCGGGGAUAACGGa -3'
miRNA:   3'- aaGCUuGaGCCCCU------GCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 94577 0.68 0.940855
Target:  5'- -gUGAACUgCGGGucaaagaccACGGGGGUGACGa -3'
miRNA:   3'- aaGCUUGA-GCCCc--------UGCCCCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 122751 0.72 0.781735
Target:  5'- -cCGAugGCUgacacCGGGcACGGGGAUGGCGGc -3'
miRNA:   3'- aaGCU--UGA-----GCCCcUGCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 148380 0.7 0.903855
Target:  5'- -cCGAGCggggugCGGGGAggcugGGGGGUGAgGGc -3'
miRNA:   3'- aaGCUUGa-----GCCCCUg----CCCCUAUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 168199 0.68 0.945248
Target:  5'- cUCGAcaGCUUGGGGgaucagACGGGaGAagucagugcgcUAGCGGg -3'
miRNA:   3'- aAGCU--UGAGCCCC------UGCCC-CU-----------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 151392 0.68 0.957122
Target:  5'- -cCGuuCUgCGGGGACGGGuaggGACGGc -3'
miRNA:   3'- aaGCuuGA-GCCCCUGCCCcua-UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 150032 0.72 0.816431
Target:  5'- --gGGGCU-GGGGAgGGGGGUAAgGGc -3'
miRNA:   3'- aagCUUGAgCCCCUgCCCCUAUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 151105 0.7 0.870859
Target:  5'- gUCGGgccGCUgGGGGaugGCGGGGGgaaUAugGGg -3'
miRNA:   3'- aAGCU---UGAgCCCC---UGCCCCU---AUugCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.