miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 234826 0.67 0.96398
Target:  5'- -aCGAagACgacgaCGGGGACGGcGAUAGCGu -3'
miRNA:   3'- aaGCU--UGa----GCCCCUGCCcCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 195836 0.66 0.982694
Target:  5'- aUCGAGCgagaucucgcgcggCaGGGuuCGGGGAUcGCGGu -3'
miRNA:   3'- aAGCUUGa-------------GcCCCu-GCCCCUAuUGCC- -5'
14308 5' -54.8 NC_003521.1 + 69732 0.67 0.96398
Target:  5'- -gCGGuaaCGGcGGGCGGGGAggcGGCGGu -3'
miRNA:   3'- aaGCUugaGCC-CCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 39222 0.7 0.884689
Target:  5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3'
miRNA:   3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 173652 0.66 0.977691
Target:  5'- gUUCGGGCggcugCGcGGGACccaGGGGu--ACGGa -3'
miRNA:   3'- -AAGCUUGa----GC-CCCUG---CCCCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 19093 0.67 0.971149
Target:  5'- --gGAGgagGGGGACGGGGAgggagacgacgcgggUGGCGGg -3'
miRNA:   3'- aagCUUgagCCCCUGCCCCU---------------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 106105 0.66 0.983801
Target:  5'- --aGGcCUCGGGcACGGGcGUGGCGGc -3'
miRNA:   3'- aagCUuGAGCCCcUGCCCcUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 76675 0.66 0.985525
Target:  5'- -gCGGACUgCGaGGACgcugGGGGAcAGCGGa -3'
miRNA:   3'- aaGCUUGA-GCcCCUG----CCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 151105 0.7 0.870859
Target:  5'- gUCGGgccGCUgGGGGaugGCGGGGGgaaUAugGGg -3'
miRNA:   3'- aAGCU---UGAgCCCC---UGCCCCU---AUugCC- -5'
14308 5' -54.8 NC_003521.1 + 38233 0.7 0.870859
Target:  5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3'
miRNA:   3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 148380 0.7 0.903855
Target:  5'- -cCGAGCggggugCGGGGAggcugGGGGGUGAgGGc -3'
miRNA:   3'- aaGCUUGa-----GCCCCUg----CCCCUAUUgCC- -5'
14308 5' -54.8 NC_003521.1 + 102964 0.7 0.897052
Target:  5'- cUCGGGCgUCGGGGcucugGCGGGGcgGcccagccGCGGc -3'
miRNA:   3'- aAGCUUG-AGCCCC-----UGCCCCuaU-------UGCC- -5'
14308 5' -54.8 NC_003521.1 + 103530 0.73 0.7636
Target:  5'- -gCGAACUCGcucauGGAggcgugcgUGGGGAUGACGGg -3'
miRNA:   3'- aaGCUUGAGCc----CCU--------GCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 187888 0.66 0.977691
Target:  5'- cUCGGGCggcaCGGGcGGCGGGGGca--GGu -3'
miRNA:   3'- aAGCUUGa---GCCC-CUGCCCCUauugCC- -5'
14308 5' -54.8 NC_003521.1 + 207662 0.66 0.977462
Target:  5'- aUCGGGa--GGGGGCaucgcgaGGGaGAUGACGGc -3'
miRNA:   3'- aAGCUUgagCCCCUG-------CCC-CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 132983 0.67 0.970032
Target:  5'- --gGGACgguaaCGGGGGacCGGGGuuggGACGGg -3'
miRNA:   3'- aagCUUGa----GCCCCU--GCCCCua--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 170520 0.67 0.967104
Target:  5'- -aUGAcgGCgugugaCGGGGACGGGGGgcagGAgGGu -3'
miRNA:   3'- aaGCU--UGa-----GCCCCUGCCCCUa---UUgCC- -5'
14308 5' -54.8 NC_003521.1 + 113588 0.67 0.967104
Target:  5'- -cUGGGcCUCGGGGgcaACGGGGGcGGCGc -3'
miRNA:   3'- aaGCUU-GAGCCCC---UGCCCCUaUUGCc -5'
14308 5' -54.8 NC_003521.1 + 239450 0.7 0.884689
Target:  5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3'
miRNA:   3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 217844 0.7 0.884689
Target:  5'- gUCGucuCUCGGGGGgGGGGGgggguuguuCGGu -3'
miRNA:   3'- aAGCuu-GAGCCCCUgCCCCUauu------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.