miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 118314 0.66 0.982413
Target:  5'- -cCGGCCUgcccgcCGCCGcGUUGGCCcugcaGAACCc -3'
miRNA:   3'- aaGUUGGA------GUGGCaCGACCGG-----UUUGG- -5'
14311 5' -53.6 NC_003521.1 + 103852 0.66 0.978122
Target:  5'- cUCGGCCUCGuCCaG-GCUGGCgAucagcGCCg -3'
miRNA:   3'- aAGUUGGAGU-GG-CaCGACCGgUu----UGG- -5'
14311 5' -53.6 NC_003521.1 + 73174 0.66 0.980355
Target:  5'- -gCGACCUggaCGCgGaGCUGGCCGgcaucgacguGACCg -3'
miRNA:   3'- aaGUUGGA---GUGgCaCGACCGGU----------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 130455 0.66 0.978122
Target:  5'- -aCGGCCgaguuuuucggUCG-CGUGCUGGCCcAGCUa -3'
miRNA:   3'- aaGUUGG-----------AGUgGCACGACCGGuUUGG- -5'
14311 5' -53.6 NC_003521.1 + 234331 0.66 0.978122
Target:  5'- cUCuGCCgUCACCGccuccGCU-GCCGGACCu -3'
miRNA:   3'- aAGuUGG-AGUGGCa----CGAcCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 218408 0.66 0.982215
Target:  5'- cUCGGCCaCGCCGcGCagcaUGGCCAGcgacagcggcggcACCa -3'
miRNA:   3'- aAGUUGGaGUGGCaCG----ACCGGUU-------------UGG- -5'
14311 5' -53.6 NC_003521.1 + 123373 0.66 0.980355
Target:  5'- -aCAGCCgCACCGacaggcgGCUaGUCAGGCCg -3'
miRNA:   3'- aaGUUGGaGUGGCa------CGAcCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 55964 0.66 0.980355
Target:  5'- -gCAGCCcCACCacgccgauGUGCaggGGCCGcAGCCg -3'
miRNA:   3'- aaGUUGGaGUGG--------CACGa--CCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 50279 0.66 0.982413
Target:  5'- -gCAGCCgggucCGCCGcUGCUGccGCCGcACCu -3'
miRNA:   3'- aaGUUGGa----GUGGC-ACGAC--CGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 233481 0.66 0.980355
Target:  5'- uUUCAGCCUgGCCuGgauCUGGuucCCGAGCCu -3'
miRNA:   3'- -AAGUUGGAgUGG-Cac-GACC---GGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 97396 0.66 0.987621
Target:  5'- --aGACCUCGCCGaaggagccCUGGcCCAGGCg -3'
miRNA:   3'- aagUUGGAGUGGCac------GACC-GGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 75544 0.66 0.980355
Target:  5'- gUUCAGCggCGCCGgcgGC-GGCUAcGCCa -3'
miRNA:   3'- -AAGUUGgaGUGGCa--CGaCCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 113017 0.66 0.984305
Target:  5'- cUUCGACCg-GCaCGUGCUGGUgc-GCCu -3'
miRNA:   3'- -AAGUUGGagUG-GCACGACCGguuUGG- -5'
14311 5' -53.6 NC_003521.1 + 150258 0.66 0.984305
Target:  5'- gUCGGCCUgCACCGcgGCcGGCCu--CUc -3'
miRNA:   3'- aAGUUGGA-GUGGCa-CGaCCGGuuuGG- -5'
14311 5' -53.6 NC_003521.1 + 103337 0.66 0.984305
Target:  5'- ---cGCCagCGCCGUGCgguaGGCCAggUa -3'
miRNA:   3'- aaguUGGa-GUGGCACGa---CCGGUuuGg -5'
14311 5' -53.6 NC_003521.1 + 88266 0.66 0.982413
Target:  5'- -cCAGCUUgACCGagUGCUGGCUgucgugcacGAACUg -3'
miRNA:   3'- aaGUUGGAgUGGC--ACGACCGG---------UUUGG- -5'
14311 5' -53.6 NC_003521.1 + 162809 0.66 0.984305
Target:  5'- gUCAugcAUCUCACCaaggGCUGGCUcugcgcGACCa -3'
miRNA:   3'- aAGU---UGGAGUGGca--CGACCGGu-----UUGG- -5'
14311 5' -53.6 NC_003521.1 + 148431 0.66 0.984305
Target:  5'- -gCGGCCgCGCCGgcgGCuccaggggUGGCCGGugCg -3'
miRNA:   3'- aaGUUGGaGUGGCa--CG--------ACCGGUUugG- -5'
14311 5' -53.6 NC_003521.1 + 95147 0.66 0.986689
Target:  5'- -gCGGCCgCGCCGacggcaaggagucgGCcGGCCGGGCCc -3'
miRNA:   3'- aaGUUGGaGUGGCa-------------CGaCCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 119719 0.66 0.984305
Target:  5'- -cCAGCCUCAgCGggaUGGCCccGGCCc -3'
miRNA:   3'- aaGUUGGAGUgGCacgACCGGu-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.