miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 211923 0.7 0.907789
Target:  5'- -cCAGCCUCAUCGUGCcGGaCGuuuCCa -3'
miRNA:   3'- aaGUUGGAGUGGCACGaCCgGUuu-GG- -5'
14311 5' -53.6 NC_003521.1 + 150070 0.72 0.818772
Target:  5'- gUCGACCuggUCGagugCGUGCUGGCCAAGugcauCCg -3'
miRNA:   3'- aAGUUGG---AGUg---GCACGACCGGUUU-----GG- -5'
14311 5' -53.6 NC_003521.1 + 74072 0.71 0.84377
Target:  5'- gUCGACCgCAUCcagcugGUGCUGGCCGAcauGCUg -3'
miRNA:   3'- aAGUUGGaGUGG------CACGACCGGUU---UGG- -5'
14311 5' -53.6 NC_003521.1 + 413 0.71 0.851729
Target:  5'- --uGACUgcagCugUGUGCUGGCgAGGCCa -3'
miRNA:   3'- aagUUGGa---GugGCACGACCGgUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 142569 0.71 0.851729
Target:  5'- -cCAGgCUCGCCGUGCccgccgUGGCCGcccccGCCu -3'
miRNA:   3'- aaGUUgGAGUGGCACG------ACCGGUu----UGG- -5'
14311 5' -53.6 NC_003521.1 + 236566 0.71 0.867046
Target:  5'- uUUCGugCUCGCCGUGU--GCCAucucacggcAGCCa -3'
miRNA:   3'- -AAGUugGAGUGGCACGacCGGU---------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 54662 0.71 0.867046
Target:  5'- -aCGAuguCCUgGCCGUGCacgcaGGCCGAGCUg -3'
miRNA:   3'- aaGUU---GGAgUGGCACGa----CCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 165695 0.7 0.878695
Target:  5'- gUCGGCCgccgaaagccgucCACCGUGCgGGCC--ACCu -3'
miRNA:   3'- aAGUUGGa------------GUGGCACGaCCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 59321 0.7 0.895112
Target:  5'- -gCAACCaCACCGUcuucuacguGCUGaGCCAcGCCa -3'
miRNA:   3'- aaGUUGGaGUGGCA---------CGAC-CGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 148925 0.72 0.818772
Target:  5'- aUCGagcACCgcagCGCCGUGCUGGCgCGuguGCUg -3'
miRNA:   3'- aAGU---UGGa---GUGGCACGACCG-GUu--UGG- -5'
14311 5' -53.6 NC_003521.1 + 156214 0.72 0.818772
Target:  5'- -aCGACCUgGCCGUcaccgacgccgaGCUGGUCGAccacACCg -3'
miRNA:   3'- aaGUUGGAgUGGCA------------CGACCGGUU----UGG- -5'
14311 5' -53.6 NC_003521.1 + 2733 0.72 0.818772
Target:  5'- gUCAccGCCUCGCUG-GCUGGCUgcuGCUa -3'
miRNA:   3'- aAGU--UGGAGUGGCaCGACCGGuu-UGG- -5'
14311 5' -53.6 NC_003521.1 + 200058 0.76 0.604277
Target:  5'- ---uGCCUCACCG-GCUGGCUu-ACCg -3'
miRNA:   3'- aaguUGGAGUGGCaCGACCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 24829 0.75 0.665514
Target:  5'- gUCAGUCUCugCGUggcGCUGGCCGcACCu -3'
miRNA:   3'- aAGUUGGAGugGCA---CGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 27455 0.74 0.695879
Target:  5'- aUUCGGCCgugagCGCCaG-GCUGGCCAGGuCCg -3'
miRNA:   3'- -AAGUUGGa----GUGG-CaCGACCGGUUU-GG- -5'
14311 5' -53.6 NC_003521.1 + 43476 0.74 0.725765
Target:  5'- -cCAGCgCggcgGCCGUGCUGGCCGcggcGGCCa -3'
miRNA:   3'- aaGUUG-Gag--UGGCACGACCGGU----UUGG- -5'
14311 5' -53.6 NC_003521.1 + 87866 0.73 0.754926
Target:  5'- ----uCCUCGCagGcGCUGGCCAGGCCg -3'
miRNA:   3'- aaguuGGAGUGg-CaCGACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 138677 0.73 0.773843
Target:  5'- gUgAGCCUCACCG-GCgacaaGGCCGugAGCCu -3'
miRNA:   3'- aAgUUGGAGUGGCaCGa----CCGGU--UUGG- -5'
14311 5' -53.6 NC_003521.1 + 89815 0.72 0.801249
Target:  5'- --aGACUUCGCCGUGUcGGCCGAcgGCg -3'
miRNA:   3'- aagUUGGAGUGGCACGaCCGGUU--UGg -5'
14311 5' -53.6 NC_003521.1 + 37415 0.72 0.810091
Target:  5'- --gGGCCUgACCGUGUggcgcgGcGCCGAGCCu -3'
miRNA:   3'- aagUUGGAgUGGCACGa-----C-CGGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.