miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 12552 1.11 0.005423
Target:  5'- uUUCAACCUCACCGUGCUGGCCAAACCg -3'
miRNA:   3'- -AAGUUGGAGUGGCACGACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 186221 0.82 0.316913
Target:  5'- cUCGACUaCGCCGUGgUGGCCGAACUc -3'
miRNA:   3'- aAGUUGGaGUGGCACgACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 72627 0.79 0.430099
Target:  5'- -aCAACaUCACCGUGCUGG-CGGGCCa -3'
miRNA:   3'- aaGUUGgAGUGGCACGACCgGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 17792 0.77 0.563757
Target:  5'- --aGGCCgUCGgCGUGCUGGCCGugcGACCg -3'
miRNA:   3'- aagUUGG-AGUgGCACGACCGGU---UUGG- -5'
14311 5' -53.6 NC_003521.1 + 240380 0.76 0.604277
Target:  5'- ---uGCCUCACCG-GCUGGCUu-ACCg -3'
miRNA:   3'- aaguUGGAGUGGCaCGACCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 200058 0.76 0.604277
Target:  5'- ---uGCCUCACCG-GCUGGCUu-ACCg -3'
miRNA:   3'- aaguUGGAGUGGCaCGACCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 130135 0.75 0.665514
Target:  5'- cUUCGACCUCaagcucgaggccACCGacgcGCUGGCCGAccggGCCg -3'
miRNA:   3'- -AAGUUGGAG------------UGGCa---CGACCGGUU----UGG- -5'
14311 5' -53.6 NC_003521.1 + 24829 0.75 0.665514
Target:  5'- gUCAGUCUCugCGUggcGCUGGCCGcACCu -3'
miRNA:   3'- aAGUUGGAGugGCA---CGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 27455 0.74 0.695879
Target:  5'- aUUCGGCCgugagCGCCaG-GCUGGCCAGGuCCg -3'
miRNA:   3'- -AAGUUGGa----GUGG-CaCGACCGGUUU-GG- -5'
14311 5' -53.6 NC_003521.1 + 24282 0.74 0.695879
Target:  5'- --uGGCCgcugCACUGUGCUGGCuCGAGCg -3'
miRNA:   3'- aagUUGGa---GUGGCACGACCG-GUUUGg -5'
14311 5' -53.6 NC_003521.1 + 43476 0.74 0.725765
Target:  5'- -cCAGCgCggcgGCCGUGCUGGCCGcggcGGCCa -3'
miRNA:   3'- aaGUUG-Gag--UGGCACGACCGGU----UUGG- -5'
14311 5' -53.6 NC_003521.1 + 32200 0.74 0.725765
Target:  5'- cUCuGCCUCACCGcggUGaCUGGCUAuGGCCg -3'
miRNA:   3'- aAGuUGGAGUGGC---AC-GACCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 87261 0.73 0.745301
Target:  5'- -gCGGCUgugCGCCGUGCgcgUGGCCAAcggGCCc -3'
miRNA:   3'- aaGUUGGa--GUGGCACG---ACCGGUU---UGG- -5'
14311 5' -53.6 NC_003521.1 + 20498 0.73 0.754926
Target:  5'- gUUCuuCCUgACCGUGCUGGUCc--CCa -3'
miRNA:   3'- -AAGuuGGAgUGGCACGACCGGuuuGG- -5'
14311 5' -53.6 NC_003521.1 + 87866 0.73 0.754926
Target:  5'- ----uCCUCGCagGcGCUGGCCAGGCCg -3'
miRNA:   3'- aaguuGGAGUGg-CaCGACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 75431 0.73 0.773843
Target:  5'- -aCGACCacuUCGUGCUGGCCAAcgcguACCu -3'
miRNA:   3'- aaGUUGGaguGGCACGACCGGUU-----UGG- -5'
14311 5' -53.6 NC_003521.1 + 138677 0.73 0.773843
Target:  5'- gUgAGCCUCACCG-GCgacaaGGCCGugAGCCu -3'
miRNA:   3'- aAgUUGGAGUGGCaCGa----CCGGU--UUGG- -5'
14311 5' -53.6 NC_003521.1 + 208722 0.72 0.797669
Target:  5'- aUCAGCCgCGCCGccaaacgcauggcGCUGGCCGuGGCCa -3'
miRNA:   3'- aAGUUGGaGUGGCa------------CGACCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 89815 0.72 0.801249
Target:  5'- --aGACUUCGCCGUGUcGGCCGAcgGCg -3'
miRNA:   3'- aagUUGGAGUGGCACGaCCGGUU--UGg -5'
14311 5' -53.6 NC_003521.1 + 37415 0.72 0.810091
Target:  5'- --gGGCCUgACCGUGUggcgcgGcGCCGAGCCu -3'
miRNA:   3'- aagUUGGAgUGGCACGa-----C-CGGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.