miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 413 0.71 0.851729
Target:  5'- --uGACUgcagCugUGUGCUGGCgAGGCCa -3'
miRNA:   3'- aagUUGGa---GugGCACGACCGgUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 1067 0.69 0.940152
Target:  5'- cUCGACCgacCAUCG-GCgGGCgAGGCCg -3'
miRNA:   3'- aAGUUGGa--GUGGCaCGaCCGgUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 2733 0.72 0.818772
Target:  5'- gUCAccGCCUCGCUG-GCUGGCUgcuGCUa -3'
miRNA:   3'- aAGU--UGGAGUGGCaCGACCGGuu-UGG- -5'
14311 5' -53.6 NC_003521.1 + 4357 0.66 0.986038
Target:  5'- --gGACCgguUCGCCGcuUGC-GGCCGAGCa -3'
miRNA:   3'- aagUUGG---AGUGGC--ACGaCCGGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 12254 0.66 0.985534
Target:  5'- -aCAACCUCAagggCGU-CUGGCCGuucaucugcauggaGACCc -3'
miRNA:   3'- aaGUUGGAGUg---GCAcGACCGGU--------------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 12383 0.66 0.986038
Target:  5'- -cCGGCCUCuuucacGCCGaguucgugcUGCUGGCUG-ACCg -3'
miRNA:   3'- aaGUUGGAG------UGGC---------ACGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 12537 0.69 0.930316
Target:  5'- uUUCcACUUCGCCGUGgaGgacGCCGAGCg -3'
miRNA:   3'- -AAGuUGGAGUGGCACgaC---CGGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 12552 1.11 0.005423
Target:  5'- uUUCAACCUCACCGUGCUGGCCAAACCg -3'
miRNA:   3'- -AAGUUGGAGUGGCACGACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 13201 0.68 0.954718
Target:  5'- cUCGGgC-CGCCGUGUUGGagggccgaccggcgcCCAAGCCu -3'
miRNA:   3'- aAGUUgGaGUGGCACGACC---------------GGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 16495 0.67 0.975707
Target:  5'- gUCGACUcagcgcgagUCACCGUGacgggggcguCUGGCC--ACCa -3'
miRNA:   3'- aAGUUGG---------AGUGGCAC----------GACCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 17745 0.68 0.953143
Target:  5'- gUCGGCCgagGCCGgggaaCUGGCCGuACCg -3'
miRNA:   3'- aAGUUGGag-UGGCac---GACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 17792 0.77 0.563757
Target:  5'- --aGGCCgUCGgCGUGCUGGCCGugcGACCg -3'
miRNA:   3'- aagUUGG-AGUgGCACGACCGGU---UUGG- -5'
14311 5' -53.6 NC_003521.1 + 18061 0.66 0.978122
Target:  5'- -cCGACCcCACCGacGCcgUGGCCGuAGCCc -3'
miRNA:   3'- aaGUUGGaGUGGCa-CG--ACCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 20498 0.73 0.754926
Target:  5'- gUUCuuCCUgACCGUGCUGGUCc--CCa -3'
miRNA:   3'- -AAGuuGGAgUGGCACGACCGGuuuGG- -5'
14311 5' -53.6 NC_003521.1 + 20580 0.66 0.987621
Target:  5'- gUgAugUUCAUCuaccUGCUGGCCAAcaGCCu -3'
miRNA:   3'- aAgUugGAGUGGc---ACGACCGGUU--UGG- -5'
14311 5' -53.6 NC_003521.1 + 21334 0.66 0.986038
Target:  5'- --uGACCgUCACCGUGCUGcUCAGcgcGCUg -3'
miRNA:   3'- aagUUGG-AGUGGCACGACcGGUU---UGG- -5'
14311 5' -53.6 NC_003521.1 + 22208 0.66 0.978122
Target:  5'- -aCcGCCgcgCGCUG-GC-GGCCGAACCg -3'
miRNA:   3'- aaGuUGGa--GUGGCaCGaCCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 22400 0.66 0.982413
Target:  5'- ---uGCCgcCGCUGUcGCUGGCCAuGCUg -3'
miRNA:   3'- aaguUGGa-GUGGCA-CGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 23435 0.69 0.940152
Target:  5'- cUCAGCCUgGCgGUGCccacggUGuGCCuGGCCg -3'
miRNA:   3'- aAGUUGGAgUGgCACG------AC-CGGuUUGG- -5'
14311 5' -53.6 NC_003521.1 + 24282 0.74 0.695879
Target:  5'- --uGGCCgcugCACUGUGCUGGCuCGAGCg -3'
miRNA:   3'- aagUUGGa---GUGGCACGACCG-GUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.