Results 1 - 20 of 291 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14316 | 3' | -56.3 | NC_003521.1 | + | 117945 | 0.75 | 0.506992 |
Target: 5'- gAGGAGGAGagcaucaucGCGGCGGCGGCcAGCACc -3' miRNA: 3'- -UUCUCCUCgc-------UGCUGUUGCCG-UCGUG- -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 197537 | 0.77 | 0.399093 |
Target: 5'- -cGAGGAGUcggcgGACGAgAGCGGCGGCGa -3' miRNA: 3'- uuCUCCUCG-----CUGCUgUUGCCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 30998 | 0.77 | 0.407521 |
Target: 5'- cGGGAuGGGGCGACGACGGCGcCGGCGa -3' miRNA: 3'- -UUCU-CCUCGCUGCUGUUGCcGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 146878 | 0.77 | 0.407521 |
Target: 5'- gAGGAGGaAGCcaGACGACGGCGGgCAGCGg -3' miRNA: 3'- -UUCUCC-UCG--CUGCUGUUGCC-GUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 31075 | 0.76 | 0.433463 |
Target: 5'- uGAGAaccGGccaacAGCGACGACGGCGGCGGC-Cg -3' miRNA: 3'- -UUCU---CC-----UCGCUGCUGUUGCCGUCGuG- -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 17470 | 0.76 | 0.442321 |
Target: 5'- cGGAGGAGagaCGACGGCAcCGGUAGCGg -3' miRNA: 3'- uUCUCCUC---GCUGCUGUuGCCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 228977 | 0.76 | 0.469493 |
Target: 5'- gAGGAGGuGCGcggGCGGCGcaggacCGGCAGCACg -3' miRNA: 3'- -UUCUCCuCGC---UGCUGUu-----GCCGUCGUG- -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 28262 | 0.76 | 0.469493 |
Target: 5'- cGAGAGGAacaGCGGCGGCGAUGaCAGCAg -3' miRNA: 3'- -UUCUCCU---CGCUGCUGUUGCcGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 196698 | 0.75 | 0.478738 |
Target: 5'- gAGGAGGAGCaGCGACGGCcgacuucaccGGCGGCGa -3' miRNA: 3'- -UUCUCCUCGcUGCUGUUG----------CCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 73126 | 0.77 | 0.399093 |
Target: 5'- cGGAGGugcugcacGGCGGgGGCAGCGGCGGCGg -3' miRNA: 3'- uUCUCC--------UCGCUgCUGUUGCCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 74779 | 0.77 | 0.382574 |
Target: 5'- ---uGGAGUauGACGACGGCGGCAGCGg -3' miRNA: 3'- uucuCCUCG--CUGCUGUUGCCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 209555 | 0.78 | 0.366517 |
Target: 5'- cGGcGGGGUGGCGGCGACGGUGGCGg -3' miRNA: 3'- uUCuCCUCGCUGCUGUUGCCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 74570 | 0.85 | 0.141726 |
Target: 5'- -uGAGG-GCGGCGACGgaGCGGCGGCGCg -3' miRNA: 3'- uuCUCCuCGCUGCUGU--UGCCGUCGUG- -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 150563 | 0.82 | 0.210821 |
Target: 5'- -cGGGuGGUGGCGGCGGCGGCGGCGCg -3' miRNA: 3'- uuCUCcUCGCUGCUGUUGCCGUCGUG- -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 218707 | 0.82 | 0.22126 |
Target: 5'- cGGAGGAGaCGGCGGCGGCGGCgGGCGa -3' miRNA: 3'- uUCUCCUC-GCUGCUGUUGCCG-UCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 163198 | 0.8 | 0.261298 |
Target: 5'- cGGuGGuGGCGGCGGCAGCGGCAGUAg -3' miRNA: 3'- uUCuCC-UCGCUGCUGUUGCCGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 92016 | 0.8 | 0.261298 |
Target: 5'- -cGAGGcGCGGCGGCGGCGGCGGUg- -3' miRNA: 3'- uuCUCCuCGCUGCUGUUGCCGUCGug -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 129891 | 0.8 | 0.273774 |
Target: 5'- gAGGAGGAGgaCGACGACGggGCGGCcGCGCg -3' miRNA: 3'- -UUCUCCUC--GCUGCUGU--UGCCGuCGUG- -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 88914 | 0.8 | 0.286723 |
Target: 5'- cAGAGGAGCGAUGACcacgGGCGaGCAGCGa -3' miRNA: 3'- uUCUCCUCGCUGCUG----UUGC-CGUCGUg -5' |
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14316 | 3' | -56.3 | NC_003521.1 | + | 28072 | 0.78 | 0.366517 |
Target: 5'- cAGGAGGGGgGAgGACGACGGCGGgGa -3' miRNA: 3'- -UUCUCCUCgCUgCUGUUGCCGUCgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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