miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 3' -56.3 NC_003521.1 + 55752 0.66 0.932951
Target:  5'- cGGGcGGcAGCGACaGGCGcggcCGGCGGUACa -3'
miRNA:   3'- -UUCuCC-UCGCUG-CUGUu---GCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 221998 0.66 0.937792
Target:  5'- uAGGGcauguGCGGCGugGGCGGgaAGCACu -3'
miRNA:   3'- uUCUCcu---CGCUGCugUUGCCg-UCGUG- -5'
14316 3' -56.3 NC_003521.1 + 192313 0.66 0.932951
Target:  5'- ---cGGuAGCGGCGu---CGGCGGCACc -3'
miRNA:   3'- uucuCC-UCGCUGCuguuGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 133861 0.66 0.922575
Target:  5'- cAGGAGGGGCuGuCGACuauCGaGCAGCuGCa -3'
miRNA:   3'- -UUCUCCUCG-CuGCUGuu-GC-CGUCG-UG- -5'
14316 3' -56.3 NC_003521.1 + 166833 0.66 0.931453
Target:  5'- -----aGGCGACGACGgugaggauacgcagGCGGUGGCGCg -3'
miRNA:   3'- uucuccUCGCUGCUGU--------------UGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 214423 0.66 0.929935
Target:  5'- aGAGAcGGcgugGGUGACGGugcugcagaaguugaUGACGGCGGCGCu -3'
miRNA:   3'- -UUCU-CC----UCGCUGCU---------------GUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 54286 0.66 0.927878
Target:  5'- gAAGAGGccguuGCGGCuGGCcACGuagaGCAGCGCg -3'
miRNA:   3'- -UUCUCCu----CGCUG-CUGuUGC----CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 164828 0.66 0.922575
Target:  5'- cGGGGGAG-GAgGAacCGGCGGcCGGCGCc -3'
miRNA:   3'- uUCUCCUCgCUgCU--GUUGCC-GUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 76048 0.66 0.929935
Target:  5'- cGGAGcGGGCcgccagacgcuugauGACGGCGAUGuGCGGCAg -3'
miRNA:   3'- uUCUC-CUCG---------------CUGCUGUUGC-CGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 184931 0.66 0.922575
Target:  5'- cGGAGGGuCGGCGACcgcgcAUGGUAGCGg -3'
miRNA:   3'- uUCUCCUcGCUGCUGu----UGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 160476 0.66 0.927878
Target:  5'- uGGGAGGAGaGGCGAggaGACGGacaCAGCAg -3'
miRNA:   3'- -UUCUCCUCgCUGCUg--UUGCC---GUCGUg -5'
14316 3' -56.3 NC_003521.1 + 215288 0.66 0.927878
Target:  5'- cAGAGGcaGGCcacCGcCAGCGGCGGCAg -3'
miRNA:   3'- uUCUCC--UCGcu-GCuGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 186845 0.66 0.922575
Target:  5'- -cGAauGGCGgcccaGCGGCGGCGuGCAGCACg -3'
miRNA:   3'- uuCUccUCGC-----UGCUGUUGC-CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 148792 0.66 0.936842
Target:  5'- -cGAGGAGCcGCGGCuGCGGacguucaucguGCGCg -3'
miRNA:   3'- uuCUCCUCGcUGCUGuUGCCgu---------CGUG- -5'
14316 3' -56.3 NC_003521.1 + 44952 0.66 0.922032
Target:  5'- gGGGAGGAaggGCGGCGACAccGCGauccccgaacccuGCcGCGCg -3'
miRNA:   3'- -UUCUCCU---CGCUGCUGU--UGC-------------CGuCGUG- -5'
14316 3' -56.3 NC_003521.1 + 105027 0.66 0.932951
Target:  5'- --cGGGAGCGcuuCGAgGACGGCccgcccguGCGCg -3'
miRNA:   3'- uucUCCUCGCu--GCUgUUGCCGu-------CGUG- -5'
14316 3' -56.3 NC_003521.1 + 155513 0.66 0.946788
Target:  5'- cAAGGcuGGAGCGACGGCGACG-UGGUu- -3'
miRNA:   3'- -UUCU--CCUCGCUGCUGUUGCcGUCGug -5'
14316 3' -56.3 NC_003521.1 + 101490 0.66 0.937792
Target:  5'- -uGAGGuGCu-CGAgCAGCGGCGGC-Ca -3'
miRNA:   3'- uuCUCCuCGcuGCU-GUUGCCGUCGuG- -5'
14316 3' -56.3 NC_003521.1 + 91919 0.66 0.922575
Target:  5'- --cAGGAcgGCGGCGGCGAugcgguggaccCGGCGGCGg -3'
miRNA:   3'- uucUCCU--CGCUGCUGUU-----------GCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 218605 0.66 0.928396
Target:  5'- aAAGAGGuacgguucggccgccAGCGcGCGGCGGuaagcggccacggcCGGCGGCGCc -3'
miRNA:   3'- -UUCUCC---------------UCGC-UGCUGUU--------------GCCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.