miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 3' -56.3 NC_003521.1 + 117945 0.75 0.506992
Target:  5'- gAGGAGGAGagcaucaucGCGGCGGCGGCcAGCACc -3'
miRNA:   3'- -UUCUCCUCgc-------UGCUGUUGCCG-UCGUG- -5'
14316 3' -56.3 NC_003521.1 + 197537 0.77 0.399093
Target:  5'- -cGAGGAGUcggcgGACGAgAGCGGCGGCGa -3'
miRNA:   3'- uuCUCCUCG-----CUGCUgUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 30998 0.77 0.407521
Target:  5'- cGGGAuGGGGCGACGACGGCGcCGGCGa -3'
miRNA:   3'- -UUCU-CCUCGCUGCUGUUGCcGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 146878 0.77 0.407521
Target:  5'- gAGGAGGaAGCcaGACGACGGCGGgCAGCGg -3'
miRNA:   3'- -UUCUCC-UCG--CUGCUGUUGCC-GUCGUg -5'
14316 3' -56.3 NC_003521.1 + 31075 0.76 0.433463
Target:  5'- uGAGAaccGGccaacAGCGACGACGGCGGCGGC-Cg -3'
miRNA:   3'- -UUCU---CC-----UCGCUGCUGUUGCCGUCGuG- -5'
14316 3' -56.3 NC_003521.1 + 17470 0.76 0.442321
Target:  5'- cGGAGGAGagaCGACGGCAcCGGUAGCGg -3'
miRNA:   3'- uUCUCCUC---GCUGCUGUuGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 228977 0.76 0.469493
Target:  5'- gAGGAGGuGCGcggGCGGCGcaggacCGGCAGCACg -3'
miRNA:   3'- -UUCUCCuCGC---UGCUGUu-----GCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 28262 0.76 0.469493
Target:  5'- cGAGAGGAacaGCGGCGGCGAUGaCAGCAg -3'
miRNA:   3'- -UUCUCCU---CGCUGCUGUUGCcGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 196698 0.75 0.478738
Target:  5'- gAGGAGGAGCaGCGACGGCcgacuucaccGGCGGCGa -3'
miRNA:   3'- -UUCUCCUCGcUGCUGUUG----------CCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 73126 0.77 0.399093
Target:  5'- cGGAGGugcugcacGGCGGgGGCAGCGGCGGCGg -3'
miRNA:   3'- uUCUCC--------UCGCUgCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 74779 0.77 0.382574
Target:  5'- ---uGGAGUauGACGACGGCGGCAGCGg -3'
miRNA:   3'- uucuCCUCG--CUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 209555 0.78 0.366517
Target:  5'- cGGcGGGGUGGCGGCGACGGUGGCGg -3'
miRNA:   3'- uUCuCCUCGCUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 74570 0.85 0.141726
Target:  5'- -uGAGG-GCGGCGACGgaGCGGCGGCGCg -3'
miRNA:   3'- uuCUCCuCGCUGCUGU--UGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 150563 0.82 0.210821
Target:  5'- -cGGGuGGUGGCGGCGGCGGCGGCGCg -3'
miRNA:   3'- uuCUCcUCGCUGCUGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 218707 0.82 0.22126
Target:  5'- cGGAGGAGaCGGCGGCGGCGGCgGGCGa -3'
miRNA:   3'- uUCUCCUC-GCUGCUGUUGCCG-UCGUg -5'
14316 3' -56.3 NC_003521.1 + 163198 0.8 0.261298
Target:  5'- cGGuGGuGGCGGCGGCAGCGGCAGUAg -3'
miRNA:   3'- uUCuCC-UCGCUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 92016 0.8 0.261298
Target:  5'- -cGAGGcGCGGCGGCGGCGGCGGUg- -3'
miRNA:   3'- uuCUCCuCGCUGCUGUUGCCGUCGug -5'
14316 3' -56.3 NC_003521.1 + 129891 0.8 0.273774
Target:  5'- gAGGAGGAGgaCGACGACGggGCGGCcGCGCg -3'
miRNA:   3'- -UUCUCCUC--GCUGCUGU--UGCCGuCGUG- -5'
14316 3' -56.3 NC_003521.1 + 88914 0.8 0.286723
Target:  5'- cAGAGGAGCGAUGACcacgGGCGaGCAGCGa -3'
miRNA:   3'- uUCUCCUCGCUGCUG----UUGC-CGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 28072 0.78 0.366517
Target:  5'- cAGGAGGGGgGAgGACGACGGCGGgGa -3'
miRNA:   3'- -UUCUCCUCgCUgCUGUUGCCGUCgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.