miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 3' -56.3 NC_003521.1 + 17032 1.06 0.005564
Target:  5'- gAAGAGGAGCGACGACAACGGCAGCACc -3'
miRNA:   3'- -UUCUCCUCGCUGCUGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 74570 0.85 0.141726
Target:  5'- -uGAGG-GCGGCGACGgaGCGGCGGCGCg -3'
miRNA:   3'- uuCUCCuCGCUGCUGU--UGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 190528 0.83 0.177576
Target:  5'- -uGAGGAGCGAgGuGCGGCGGCAGCAg -3'
miRNA:   3'- uuCUCCUCGCUgC-UGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 148436 0.83 0.186569
Target:  5'- cGGAGGAGcCGGCGgaGCGACGGCAGCGg -3'
miRNA:   3'- uUCUCCUC-GCUGC--UGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 207925 0.83 0.191214
Target:  5'- --cGGGGGCGGCGggcACGGCGGCAGCACc -3'
miRNA:   3'- uucUCCUCGCUGC---UGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 98623 0.82 0.195961
Target:  5'- gAGGAGGgcgagAGCGGCGGCGGCGGUAGCGg -3'
miRNA:   3'- -UUCUCC-----UCGCUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 150563 0.82 0.210821
Target:  5'- -cGGGuGGUGGCGGCGGCGGCGGCGCg -3'
miRNA:   3'- uuCUCcUCGCUGCUGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 218707 0.82 0.22126
Target:  5'- cGGAGGAGaCGGCGGCGGCGGCgGGCGa -3'
miRNA:   3'- uUCUCCUC-GCUGCUGUUGCCG-UCGUg -5'
14316 3' -56.3 NC_003521.1 + 92016 0.8 0.261298
Target:  5'- -cGAGGcGCGGCGGCGGCGGCGGUg- -3'
miRNA:   3'- uuCUCCuCGCUGCUGUUGCCGUCGug -5'
14316 3' -56.3 NC_003521.1 + 163198 0.8 0.261298
Target:  5'- cGGuGGuGGCGGCGGCAGCGGCAGUAg -3'
miRNA:   3'- uUCuCC-UCGCUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 98465 0.8 0.261298
Target:  5'- gAGGAGGcGGCGGCGGCcGCGGCGGC-Cg -3'
miRNA:   3'- -UUCUCC-UCGCUGCUGuUGCCGUCGuG- -5'
14316 3' -56.3 NC_003521.1 + 129891 0.8 0.273774
Target:  5'- gAGGAGGAGgaCGACGACGggGCGGCcGCGCg -3'
miRNA:   3'- -UUCUCCUC--GCUGCUGU--UGCCGuCGUG- -5'
14316 3' -56.3 NC_003521.1 + 88914 0.8 0.286723
Target:  5'- cAGAGGAGCGAUGACcacgGGCGaGCAGCGa -3'
miRNA:   3'- uUCUCCUCGCUGCUG----UUGC-CGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 71874 0.8 0.286723
Target:  5'- --cGGGAGCGACGGCGACaGCGGCGg -3'
miRNA:   3'- uucUCCUCGCUGCUGUUGcCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 122596 0.79 0.292705
Target:  5'- -cGAGGcauugaccaccccGGCGACGGCGGCGGCcGCGCg -3'
miRNA:   3'- uuCUCC-------------UCGCUGCUGUUGCCGuCGUG- -5'
14316 3' -56.3 NC_003521.1 + 123542 0.79 0.292705
Target:  5'- uGAGGGGAGCcggcaccacggccGACGACGGCGGUGGCGg -3'
miRNA:   3'- -UUCUCCUCG-------------CUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 142204 0.79 0.293375
Target:  5'- gAGGAGGAGCGACGugG-CGGCAGa-- -3'
miRNA:   3'- -UUCUCCUCGCUGCugUuGCCGUCgug -5'
14316 3' -56.3 NC_003521.1 + 155253 0.79 0.293375
Target:  5'- uGGuGGGG-GGCGGCGGCGGCGGCGCc -3'
miRNA:   3'- uUCuCCUCgCUGCUGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 113851 0.79 0.307042
Target:  5'- -cGGGGcggccGGCGACGACGgcgcggguuccGCGGCGGCACa -3'
miRNA:   3'- uuCUCC-----UCGCUGCUGU-----------UGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 7427 0.79 0.321189
Target:  5'- --cAGGAGCcgaGACGGCAGCGGCAGCu- -3'
miRNA:   3'- uucUCCUCG---CUGCUGUUGCCGUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.