miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 3' -56.3 NC_003521.1 + 347 0.67 0.905282
Target:  5'- aAGGAGG-GCaaACGAUGugGGCGGCGu -3'
miRNA:   3'- -UUCUCCuCGc-UGCUGUugCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 4252 0.68 0.879071
Target:  5'- gGGGAGGAG-GACGAgaagGACGGCGGaGCc -3'
miRNA:   3'- -UUCUCCUCgCUGCUg---UUGCCGUCgUG- -5'
14316 3' -56.3 NC_003521.1 + 5516 0.69 0.825245
Target:  5'- cAGGAGuagcagcAGCGACGGUGACGGCAGCcgGCg -3'
miRNA:   3'- -UUCUCc------UCGCUGCUGUUGCCGUCG--UG- -5'
14316 3' -56.3 NC_003521.1 + 5922 0.66 0.939664
Target:  5'- -cGAGGGGCuACGAUGACGGUuccgacgaaacauccAGCGu -3'
miRNA:   3'- uuCUCCUCGcUGCUGUUGCCG---------------UCGUg -5'
14316 3' -56.3 NC_003521.1 + 6071 0.72 0.685646
Target:  5'- gAAG-GGAauGCGACGGCcgguGCGGCGGCGu -3'
miRNA:   3'- -UUCuCCU--CGCUGCUGu---UGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 6386 0.71 0.715271
Target:  5'- cGGAGGGGCGcCG-CAgcuaccGCGGCGGCGa -3'
miRNA:   3'- uUCUCCUCGCuGCuGU------UGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 6458 0.76 0.47318
Target:  5'- cGGGAGGAGCgGAUGACGGCacgggaggcagguccGGCAGCGg -3'
miRNA:   3'- -UUCUCCUCG-CUGCUGUUG---------------CCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 7427 0.79 0.321189
Target:  5'- --cAGGAGCcgaGACGGCAGCGGCAGCu- -3'
miRNA:   3'- uucUCCUCG---CUGCUGUUGCCGUCGug -5'
14316 3' -56.3 NC_003521.1 + 7644 0.67 0.911275
Target:  5'- -cGAcGGuaacGGCGGCcGCcACGGCGGCGCg -3'
miRNA:   3'- uuCU-CC----UCGCUGcUGuUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 7732 0.75 0.516568
Target:  5'- gGGGAGGgcggcgcgAGCGGCGGaGGCGGCGGCAg -3'
miRNA:   3'- -UUCUCC--------UCGCUGCUgUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 7978 0.73 0.585324
Target:  5'- cGGGAGGGuccGCGGCGGCGggggagguaccGgGGCAGCGCc -3'
miRNA:   3'- -UUCUCCU---CGCUGCUGU-----------UgCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 8545 0.68 0.857169
Target:  5'- --uGGGcGCGACGACAuccaccgucACGGUccgAGCACa -3'
miRNA:   3'- uucUCCuCGCUGCUGU---------UGCCG---UCGUG- -5'
14316 3' -56.3 NC_003521.1 + 13440 0.72 0.68465
Target:  5'- -cGAGGA-CGACGgacgucaagcgcaGCGGCGGUAGCGCc -3'
miRNA:   3'- uuCUCCUcGCUGC-------------UGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 13677 0.71 0.734693
Target:  5'- gGAGAGGguGGCGGCGACGACuuGCgAGUGCu -3'
miRNA:   3'- -UUCUCC--UCGCUGCUGUUGc-CG-UCGUG- -5'
14316 3' -56.3 NC_003521.1 + 15048 0.66 0.942404
Target:  5'- -uGAcGAGCGGCG-CGagcGCGaGCGGCGCg -3'
miRNA:   3'- uuCUcCUCGCUGCuGU---UGC-CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 15867 0.67 0.897152
Target:  5'- -cGAGGAGaCGGa-GCuggugcucuguaugGGCGGCAGCACg -3'
miRNA:   3'- uuCUCCUC-GCUgcUG--------------UUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 17032 1.06 0.005564
Target:  5'- gAAGAGGAGCGACGACAACGGCAGCACc -3'
miRNA:   3'- -UUCUCCUCGCUGCUGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 17470 0.76 0.442321
Target:  5'- cGGAGGAGagaCGACGGCAcCGGUAGCGg -3'
miRNA:   3'- uUCUCCUC---GCUGCUGUuGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 18732 0.67 0.905282
Target:  5'- uGGcGGcGGCGAucgUGGCGGCGGUGGCGCc -3'
miRNA:   3'- uUCuCC-UCGCU---GCUGUUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 18883 0.66 0.937792
Target:  5'- -uGAGcAGCGACGAgGacgaggcgccGCGGCAGCc- -3'
miRNA:   3'- uuCUCcUCGCUGCUgU----------UGCCGUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.