miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 5' -59.3 NC_003521.1 + 84227 0.66 0.865897
Target:  5'- aGACauuuaGCUGCUGGaUGGUGACCCcCa -3'
miRNA:   3'- gCUGcua--UGGCGACC-GCCGCUGGGuG- -5'
14316 5' -59.3 NC_003521.1 + 213598 0.66 0.858728
Target:  5'- cCGGCGAUgaccagGCUGUuggGGUGGCGGuCgCCGCg -3'
miRNA:   3'- -GCUGCUA------UGGCGa--CCGCCGCU-G-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 111158 0.66 0.879668
Target:  5'- gGACGGUccgcauagcgcgGCCGCcccGGCGaCGGCgCCGCg -3'
miRNA:   3'- gCUGCUA------------UGGCGa--CCGCcGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 132683 0.66 0.872879
Target:  5'- aGACGAUcggcucgcGCCcgGCUGGCGG-GACgCgGCa -3'
miRNA:   3'- gCUGCUA--------UGG--CGACCGCCgCUG-GgUG- -5'
14316 5' -59.3 NC_003521.1 + 129548 0.66 0.872879
Target:  5'- gCGGCGG---CGCUGGCacGGCgGGCCCGa -3'
miRNA:   3'- -GCUGCUaugGCGACCG--CCG-CUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 201014 0.66 0.865897
Target:  5'- uCGGCGGaggACCGCc--CGGCGcCCCGCc -3'
miRNA:   3'- -GCUGCUa--UGGCGaccGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 19944 0.66 0.893282
Target:  5'- gGGCGAgaucguggugaggugGCCggGCUGGCGGUGAUCg-- -3'
miRNA:   3'- gCUGCUa--------------UGG--CGACCGCCGCUGGgug -5'
14316 5' -59.3 NC_003521.1 + 239759 0.66 0.872879
Target:  5'- gCGGCGAgagcUGgCGCaGGuCGGUGGCCC-Cg -3'
miRNA:   3'- -GCUGCU----AUgGCGaCC-GCCGCUGGGuG- -5'
14316 5' -59.3 NC_003521.1 + 60541 0.66 0.872879
Target:  5'- aGACGGUGCUGCUcaacGUGcGCG-CCUACu -3'
miRNA:   3'- gCUGCUAUGGCGAc---CGC-CGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 71357 0.66 0.865897
Target:  5'- aCGACGAcGCgC-CUGGCGaCGaACCCGCc -3'
miRNA:   3'- -GCUGCUaUG-GcGACCGCcGC-UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 45328 0.66 0.855809
Target:  5'- cCGACGGcuacgaccucuucGCCGacgUGGaaCGGCGACCCAUg -3'
miRNA:   3'- -GCUGCUa------------UGGCg--ACC--GCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 114546 0.66 0.858728
Target:  5'- --uCGAUuuCCGCUGGCGcgguuGCGAgauCCCGCu -3'
miRNA:   3'- gcuGCUAu-GGCGACCGC-----CGCU---GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 195515 0.66 0.858728
Target:  5'- uCGGCG-UGUCGCUGGUGGCG-UUCAUg -3'
miRNA:   3'- -GCUGCuAUGGCGACCGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 114427 0.66 0.865897
Target:  5'- gGGcCGAgACCugUGGCGGCaccaGACCCGCg -3'
miRNA:   3'- gCU-GCUaUGGcgACCGCCG----CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 43481 0.66 0.872879
Target:  5'- gCGGCG--GCCguGCUGGCcgcGGCGGCCaACa -3'
miRNA:   3'- -GCUGCuaUGG--CGACCG---CCGCUGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 112431 0.66 0.858728
Target:  5'- cCGACGc--CCGCUca-GGCGGCCCAg -3'
miRNA:   3'- -GCUGCuauGGCGAccgCCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 54558 0.66 0.878998
Target:  5'- uGACG-UugCGCUugacgcgGGUGuGCGGCCCGa -3'
miRNA:   3'- gCUGCuAugGCGA-------CCGC-CGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 89877 0.66 0.872189
Target:  5'- -uACGAcGCCacCUGGCGGUGugugaaaACCCGCa -3'
miRNA:   3'- gcUGCUaUGGc-GACCGCCGC-------UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 166240 0.66 0.872879
Target:  5'- gCG-UGAUGCCGCccGGCGaGCGGgCCGu -3'
miRNA:   3'- -GCuGCUAUGGCGa-CCGC-CGCUgGGUg -5'
14316 5' -59.3 NC_003521.1 + 17765 0.66 0.865897
Target:  5'- uGGCcGUACCGCcGGCGGCGGacggUCAg -3'
miRNA:   3'- gCUGcUAUGGCGaCCGCCGCUg---GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.