miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 5' -59.3 NC_003521.1 + 17067 1.1 0.00229
Target:  5'- cCGACGAUACCGCUGGCGGCGACCCACg -3'
miRNA:   3'- -GCUGCUAUGGCGACCGCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 124042 0.87 0.07447
Target:  5'- aGACGGccagcgUGCCGC-GGCGGCGGCCCACg -3'
miRNA:   3'- gCUGCU------AUGGCGaCCGCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 118687 0.83 0.13862
Target:  5'- gCGGCGGUACCGCUGGUGGagggcaGGCUCAUg -3'
miRNA:   3'- -GCUGCUAUGGCGACCGCCg-----CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 137307 0.82 0.15647
Target:  5'- uGGCGcgGCUGCUGcGCGGCGACCC-Cg -3'
miRNA:   3'- gCUGCuaUGGCGAC-CGCCGCUGGGuG- -5'
14316 5' -59.3 NC_003521.1 + 98471 0.8 0.198497
Target:  5'- gCGGCGGcgGCCGCggcggccgUGGCGGCGGCCuCGCg -3'
miRNA:   3'- -GCUGCUa-UGGCG--------ACCGCCGCUGG-GUG- -5'
14316 5' -59.3 NC_003521.1 + 58029 0.8 0.221461
Target:  5'- aCGACGAgggcgcgcgcguguUGCUGCUGGCGGCcACCCGa -3'
miRNA:   3'- -GCUGCU--------------AUGGCGACCGCCGcUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 186659 0.78 0.261578
Target:  5'- gCGGCGGUGgCGgaGGCGGCGGCCUc- -3'
miRNA:   3'- -GCUGCUAUgGCgaCCGCCGCUGGGug -5'
14316 5' -59.3 NC_003521.1 + 113742 0.78 0.267513
Target:  5'- cCGACGuucCUGCUGGCGGCuGACCgACa -3'
miRNA:   3'- -GCUGCuauGGCGACCGCCG-CUGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 18720 0.77 0.298823
Target:  5'- uGugGcUGCCGCUGGCGGCGGCg--- -3'
miRNA:   3'- gCugCuAUGGCGACCGCCGCUGggug -5'
14316 5' -59.3 NC_003521.1 + 84073 0.77 0.32586
Target:  5'- uCGAUGAUcCUGCUGGgGGCGgcaaagaccgaGCCCACg -3'
miRNA:   3'- -GCUGCUAuGGCGACCgCCGC-----------UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 150656 0.77 0.332897
Target:  5'- gCGACGAagGCgGCUcuccGGCGGCGGCgCCGCu -3'
miRNA:   3'- -GCUGCUa-UGgCGA----CCGCCGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 25536 0.76 0.347302
Target:  5'- ------cGCCGCUGGCGGUGGCCUGCc -3'
miRNA:   3'- gcugcuaUGGCGACCGCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 33628 0.76 0.354671
Target:  5'- gGACGAUGCCGCcGaGCGGCucacauCCCGCu -3'
miRNA:   3'- gCUGCUAUGGCGaC-CGCCGcu----GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 156163 0.76 0.362149
Target:  5'- aCGACGGUGgCGa-GGCGGaggaGACCCACg -3'
miRNA:   3'- -GCUGCUAUgGCgaCCGCCg---CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 69691 0.75 0.401153
Target:  5'- uGACGGUGguccuggugUCGgUGGCGGCGGCCCu- -3'
miRNA:   3'- gCUGCUAU---------GGCgACCGCCGCUGGGug -5'
14316 5' -59.3 NC_003521.1 + 4459 0.75 0.417486
Target:  5'- -aGCGAUGCgGCUgacggucugGGCGGCGAUCCAg -3'
miRNA:   3'- gcUGCUAUGgCGA---------CCGCCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 16726 0.75 0.417486
Target:  5'- gCGGCGAguucggcgACCGCcGGCGcGCGcGCCCGCc -3'
miRNA:   3'- -GCUGCUa-------UGGCGaCCGC-CGC-UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 110855 0.75 0.417486
Target:  5'- gCGACGGUGCaCGUaGaGCaGCGGCCCGCg -3'
miRNA:   3'- -GCUGCUAUG-GCGaC-CGcCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 196990 0.75 0.425803
Target:  5'- uGACGGgcCCGCggccGGCGGCGGCUgACc -3'
miRNA:   3'- gCUGCUauGGCGa---CCGCCGCUGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 21778 0.74 0.434217
Target:  5'- cCGugGcGUGCCuGUccgUGGCGGUGAUCCACg -3'
miRNA:   3'- -GCugC-UAUGG-CG---ACCGCCGCUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.