miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 5' -59.3 NC_003521.1 + 59 0.67 0.828282
Target:  5'- gGAacCGGUuuCCGC-GGCGGCGugCgGCg -3'
miRNA:   3'- gCU--GCUAu-GGCGaCCGCCGCugGgUG- -5'
14316 5' -59.3 NC_003521.1 + 350 0.69 0.732819
Target:  5'- gCG-UGAgcUGCCGgaGGCGGCG-CCUGCg -3'
miRNA:   3'- -GCuGCU--AUGGCgaCCGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 787 0.66 0.865897
Target:  5'- uCGGCGGaggACCGCc--CGGCGcCCCGCc -3'
miRNA:   3'- -GCUGCUa--UGGCGaccGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 4343 0.7 0.685702
Target:  5'- uGGCGccaccGCCGCcGGCGGUucgcucaucgcGGCCCGCg -3'
miRNA:   3'- gCUGCua---UGGCGaCCGCCG-----------CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 4459 0.75 0.417486
Target:  5'- -aGCGAUGCgGCUgacggucugGGCGGCGAUCCAg -3'
miRNA:   3'- gcUGCUAUGgCGA---------CCGCCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 5302 0.66 0.879668
Target:  5'- cCGGC-AUGuuUCGCgggGGCGGCGugcCCCGCc -3'
miRNA:   3'- -GCUGcUAU--GGCGa--CCGCCGCu--GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 6080 0.68 0.803759
Target:  5'- gCGACG--GCCGgUgcGGCGGCGuuCCGCc -3'
miRNA:   3'- -GCUGCuaUGGCgA--CCGCCGCugGGUG- -5'
14316 5' -59.3 NC_003521.1 + 6391 0.68 0.786707
Target:  5'- gGGCGccgcagcUACCGC-GGCGGCGACgggucuugCCGCc -3'
miRNA:   3'- gCUGCu------AUGGCGaCCGCCGCUG--------GGUG- -5'
14316 5' -59.3 NC_003521.1 + 7643 0.72 0.588417
Target:  5'- cCGACGGUaacggcgGCCGCcacGGCGGCGcggacagcgguGCCCAa -3'
miRNA:   3'- -GCUGCUA-------UGGCGa--CCGCCGC-----------UGGGUg -5'
14316 5' -59.3 NC_003521.1 + 12803 0.68 0.775353
Target:  5'- cCGACaAUGCCGaagacguggccaacCUGGUGGCcACCUACg -3'
miRNA:   3'- -GCUGcUAUGGC--------------GACCGCCGcUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 14458 0.72 0.589377
Target:  5'- gCGGCGucagccGCCGCUcccGCGGCGcuACCCGCg -3'
miRNA:   3'- -GCUGCua----UGGCGAc--CGCCGC--UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 14676 0.72 0.56073
Target:  5'- aCGACGccgagugccGCCGCUGGUGGUGGggcaUCCGCg -3'
miRNA:   3'- -GCUGCua-------UGGCGACCGCCGCU----GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 16084 0.66 0.879668
Target:  5'- cCGACGcgcugGCCGcCUGcGuCGGCGAgcaCCACg -3'
miRNA:   3'- -GCUGCua---UGGC-GAC-C-GCCGCUg--GGUG- -5'
14316 5' -59.3 NC_003521.1 + 16423 0.69 0.714151
Target:  5'- cCGGCGAggugUACCgGCUGGCcGaCGAUCUACa -3'
miRNA:   3'- -GCUGCU----AUGG-CGACCGcC-GCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 16620 0.73 0.486626
Target:  5'- gGGCGucaGUACCGCUGGCucugucgcGGCGACCg-- -3'
miRNA:   3'- gCUGC---UAUGGCGACCG--------CCGCUGGgug -5'
14316 5' -59.3 NC_003521.1 + 16726 0.75 0.417486
Target:  5'- gCGGCGAguucggcgACCGCcGGCGcGCGcGCCCGCc -3'
miRNA:   3'- -GCUGCUa-------UGGCGaCCGC-CGC-UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 17016 0.7 0.666524
Target:  5'- uGGCGGcGgCGCaGGCccgucgucuGGCGGCCCACg -3'
miRNA:   3'- gCUGCUaUgGCGaCCG---------CCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 17067 1.1 0.00229
Target:  5'- cCGACGAUACCGCUGGCGGCGACCCACg -3'
miRNA:   3'- -GCUGCUAUGGCGACCGCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 17356 0.66 0.892654
Target:  5'- gGGCcGUGaCGCcgGcGCGGCGGCCCAg -3'
miRNA:   3'- gCUGcUAUgGCGa-C-CGCCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 17765 0.66 0.865897
Target:  5'- uGGCcGUACCGCcGGCGGCGGacggUCAg -3'
miRNA:   3'- gCUGcUAUGGCGaCCGCCGCUg---GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.