miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 5' -59.3 NC_003521.1 + 226948 0.72 0.570242
Target:  5'- cCGGCGAaAUCcaUGGCGGCGccGCCCGCa -3'
miRNA:   3'- -GCUGCUaUGGcgACCGCCGC--UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 157965 0.74 0.477676
Target:  5'- gCGACGAcGgCGCUGGUaGCGACgCCGCc -3'
miRNA:   3'- -GCUGCUaUgGCGACCGcCGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 103219 0.73 0.486626
Target:  5'- gGAUGAggucGCCgGCcaGGCGGCGGCCCAa -3'
miRNA:   3'- gCUGCUa---UGG-CGa-CCGCCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 91929 0.73 0.495655
Target:  5'- gCGGCGAUGCgGUggacccGGCGGCGgACCC-Cg -3'
miRNA:   3'- -GCUGCUAUGgCGa-----CCGCCGC-UGGGuG- -5'
14316 5' -59.3 NC_003521.1 + 36005 0.73 0.504758
Target:  5'- gCGACGGcgaCGgaGGUGGCGGcCCCACg -3'
miRNA:   3'- -GCUGCUaugGCgaCCGCCGCU-GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 116883 0.73 0.513933
Target:  5'- uGGCGcgGCUGC-GGCGGCGcGCCgGCg -3'
miRNA:   3'- gCUGCuaUGGCGaCCGCCGC-UGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 213734 0.73 0.523176
Target:  5'- aGACGGcGCCGCagaaggccgUGGUGGCGG-CCACg -3'
miRNA:   3'- gCUGCUaUGGCG---------ACCGCCGCUgGGUG- -5'
14316 5' -59.3 NC_003521.1 + 191871 0.72 0.551263
Target:  5'- uGuCGAUGuCCGUccaacugGGCGGCGGCgCCACg -3'
miRNA:   3'- gCuGCUAU-GGCGa------CCGCCGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 39594 0.72 0.560731
Target:  5'- uCGGCGGUcCUGCccugggUGGCGGCGuCUCGCa -3'
miRNA:   3'- -GCUGCUAuGGCG------ACCGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 74578 0.74 0.468809
Target:  5'- gCGACGGaGCgGCgGcGCGGCGuCCCGCg -3'
miRNA:   3'- -GCUGCUaUGgCGaC-CGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 145887 0.74 0.460026
Target:  5'- aCGACGAgGCCGCcGGCGGCGGgagcagcggcggUUCGCa -3'
miRNA:   3'- -GCUGCUaUGGCGaCCGCCGCU------------GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 129986 0.74 0.451332
Target:  5'- cCGuCGcUGCCGCUgcgccGGCGGCGGCgCGCa -3'
miRNA:   3'- -GCuGCuAUGGCGA-----CCGCCGCUGgGUG- -5'
14316 5' -59.3 NC_003521.1 + 118687 0.83 0.13862
Target:  5'- gCGGCGGUACCGCUGGUGGagggcaGGCUCAUg -3'
miRNA:   3'- -GCUGCUAUGGCGACCGCCg-----CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 137307 0.82 0.15647
Target:  5'- uGGCGcgGCUGCUGcGCGGCGACCC-Cg -3'
miRNA:   3'- gCUGCuaUGGCGAC-CGCCGCUGGGuG- -5'
14316 5' -59.3 NC_003521.1 + 58029 0.8 0.221461
Target:  5'- aCGACGAgggcgcgcgcguguUGCUGCUGGCGGCcACCCGa -3'
miRNA:   3'- -GCUGCU--------------AUGGCGACCGCCGcUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 18720 0.77 0.298823
Target:  5'- uGugGcUGCCGCUGGCGGCGGCg--- -3'
miRNA:   3'- gCugCuAUGGCGACCGCCGCUGggug -5'
14316 5' -59.3 NC_003521.1 + 84073 0.77 0.32586
Target:  5'- uCGAUGAUcCUGCUGGgGGCGgcaaagaccgaGCCCACg -3'
miRNA:   3'- -GCUGCUAuGGCGACCgCCGC-----------UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 150656 0.77 0.332897
Target:  5'- gCGACGAagGCgGCUcuccGGCGGCGGCgCCGCu -3'
miRNA:   3'- -GCUGCUa-UGgCGA----CCGCCGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 156163 0.76 0.362149
Target:  5'- aCGACGGUGgCGa-GGCGGaggaGACCCACg -3'
miRNA:   3'- -GCUGCUAUgGCgaCCGCCg---CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 119922 0.74 0.442728
Target:  5'- gGugGAUGCCGCUGaCGG-GcACCCGCu -3'
miRNA:   3'- gCugCUAUGGCGACcGCCgC-UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.